Plastomes of two Rehmannia species： comparative genomic and phylogenetic analyses

Phylogenetic relationships within Rehmannia have not been well solved. Here, we assembled and reported two new complete plastomes of R. glutinosa and R. chingii by de novo assembly. The complete plastomes of R. glutinosa and R. chingii were 153,797 and 153,328 bp in length, respectively. These two p...

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Autores principales: Sun, Jing, Sun, Mengqi, Wang, Danchou, Xu, Kailun, Hu, Renyong, Zhang, Yonghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954473/
https://www.ncbi.nlm.nih.gov/pubmed/33763569
http://dx.doi.org/10.1080/23802359.2021.1878953
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author Sun, Jing
Sun, Mengqi
Wang, Danchou
Xu, Kailun
Hu, Renyong
Zhang, Yonghua
author_facet Sun, Jing
Sun, Mengqi
Wang, Danchou
Xu, Kailun
Hu, Renyong
Zhang, Yonghua
author_sort Sun, Jing
collection PubMed
description Phylogenetic relationships within Rehmannia have not been well solved. Here, we assembled and reported two new complete plastomes of R. glutinosa and R. chingii by de novo assembly. The complete plastomes of R. glutinosa and R. chingii were 153,797 and 153,328 bp in length, respectively. These two plastomes had 98.8% sequence identity and a total of 401 SNPs, 137 indels and 6 inversions. They were highly conserved in GC content (43.1%), gene order, and gene content (133 genes), including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenomic analysis confirmed the monophyly of Rehmannieae and supported R. chingii as the basal taxon of Rehmannia.
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spelling pubmed-79544732021-03-23 Plastomes of two Rehmannia species： comparative genomic and phylogenetic analyses Sun, Jing Sun, Mengqi Wang, Danchou Xu, Kailun Hu, Renyong Zhang, Yonghua Mitochondrial DNA B Resour Mitogenome Announcement Phylogenetic relationships within Rehmannia have not been well solved. Here, we assembled and reported two new complete plastomes of R. glutinosa and R. chingii by de novo assembly. The complete plastomes of R. glutinosa and R. chingii were 153,797 and 153,328 bp in length, respectively. These two plastomes had 98.8% sequence identity and a total of 401 SNPs, 137 indels and 6 inversions. They were highly conserved in GC content (43.1%), gene order, and gene content (133 genes), including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenomic analysis confirmed the monophyly of Rehmannieae and supported R. chingii as the basal taxon of Rehmannia. Taylor & Francis 2021-03-11 /pmc/articles/PMC7954473/ /pubmed/33763569 http://dx.doi.org/10.1080/23802359.2021.1878953 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Sun, Jing
Sun, Mengqi
Wang, Danchou
Xu, Kailun
Hu, Renyong
Zhang, Yonghua
Plastomes of two Rehmannia species： comparative genomic and phylogenetic analyses
title Plastomes of two Rehmannia species： comparative genomic and phylogenetic analyses
title_full Plastomes of two Rehmannia species： comparative genomic and phylogenetic analyses
title_fullStr Plastomes of two Rehmannia species： comparative genomic and phylogenetic analyses
title_full_unstemmed Plastomes of two Rehmannia species： comparative genomic and phylogenetic analyses
title_short Plastomes of two Rehmannia species： comparative genomic and phylogenetic analyses
title_sort plastomes of two rehmannia species： comparative genomic and phylogenetic analyses
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954473/
https://www.ncbi.nlm.nih.gov/pubmed/33763569
http://dx.doi.org/10.1080/23802359.2021.1878953
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