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The complete plastid genome of Lilium regale E.H.Wilson
Lilium regale E.H.Wilson is a native lily species in western Sichuan of China and an important resource for lily breeding. In this study, the plastid genome of L. regale was assembled de novo using the next-generation sequencing data. The plastid genome of L. regale was 152,998 bp in length, with a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954476/ https://www.ncbi.nlm.nih.gov/pubmed/33763585 http://dx.doi.org/10.1080/23802359.2021.1882913 |
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author | Xu, Leifeng Cao, Yuwei Yang, Panpan Ming, Jun |
author_facet | Xu, Leifeng Cao, Yuwei Yang, Panpan Ming, Jun |
author_sort | Xu, Leifeng |
collection | PubMed |
description | Lilium regale E.H.Wilson is a native lily species in western Sichuan of China and an important resource for lily breeding. In this study, the plastid genome of L. regale was assembled de novo using the next-generation sequencing data. The plastid genome of L. regale was 152,998 bp in length, with a typical quadripartite circle structure consisting of a small single-copy region of 17,529 bp, a large single-copy region of 82,375 bp, and a pair of inverted repeats of 26,547 bp each. A total of 137 different genes were predicted, including 84 protein-coding genes, 38 transfer RNA genes, 8 ribosomal RNA genes, and 7 pseudogenes. The overall GC content of the plastid genome was 36.98%. Phylogenetic analysis revealed that L. regale is most closely related to Lilium leucanthum. |
format | Online Article Text |
id | pubmed-7954476 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-79544762021-03-23 The complete plastid genome of Lilium regale E.H.Wilson Xu, Leifeng Cao, Yuwei Yang, Panpan Ming, Jun Mitochondrial DNA B Resour Mitogenome Announcement Lilium regale E.H.Wilson is a native lily species in western Sichuan of China and an important resource for lily breeding. In this study, the plastid genome of L. regale was assembled de novo using the next-generation sequencing data. The plastid genome of L. regale was 152,998 bp in length, with a typical quadripartite circle structure consisting of a small single-copy region of 17,529 bp, a large single-copy region of 82,375 bp, and a pair of inverted repeats of 26,547 bp each. A total of 137 different genes were predicted, including 84 protein-coding genes, 38 transfer RNA genes, 8 ribosomal RNA genes, and 7 pseudogenes. The overall GC content of the plastid genome was 36.98%. Phylogenetic analysis revealed that L. regale is most closely related to Lilium leucanthum. Taylor & Francis 2021-03-11 /pmc/articles/PMC7954476/ /pubmed/33763585 http://dx.doi.org/10.1080/23802359.2021.1882913 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Xu, Leifeng Cao, Yuwei Yang, Panpan Ming, Jun The complete plastid genome of Lilium regale E.H.Wilson |
title | The complete plastid genome of Lilium regale E.H.Wilson |
title_full | The complete plastid genome of Lilium regale E.H.Wilson |
title_fullStr | The complete plastid genome of Lilium regale E.H.Wilson |
title_full_unstemmed | The complete plastid genome of Lilium regale E.H.Wilson |
title_short | The complete plastid genome of Lilium regale E.H.Wilson |
title_sort | complete plastid genome of lilium regale e.h.wilson |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954476/ https://www.ncbi.nlm.nih.gov/pubmed/33763585 http://dx.doi.org/10.1080/23802359.2021.1882913 |
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