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Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images
The capability of generalization to unseen domains is crucial for deep learning models when considering real-world scenarios. However, current available medical image datasets, such as those for COVID-19 CT images, have large variations of infections and domain shift problems. To address this issue,...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Ltd.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954643/ https://www.ncbi.nlm.nih.gov/pubmed/33746369 http://dx.doi.org/10.1016/j.eswa.2021.114848 |
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author | Jin, Qiangguo Cui, Hui Sun, Changming Meng, Zhaopeng Wei, Leyi Su, Ran |
author_facet | Jin, Qiangguo Cui, Hui Sun, Changming Meng, Zhaopeng Wei, Leyi Su, Ran |
author_sort | Jin, Qiangguo |
collection | PubMed |
description | The capability of generalization to unseen domains is crucial for deep learning models when considering real-world scenarios. However, current available medical image datasets, such as those for COVID-19 CT images, have large variations of infections and domain shift problems. To address this issue, we propose a prior knowledge driven domain adaptation and a dual-domain enhanced self-correction learning scheme. Based on the novel learning scheme, a domain adaptation based self-correction model (DASC-Net) is proposed for COVID-19 infection segmentation on CT images. DASC-Net consists of a novel attention and feature domain enhanced domain adaptation model (AFD-DA) to solve the domain shifts and a self-correction learning process to refine segmentation results. The innovations in AFD-DA include an image-level activation feature extractor with attention to lung abnormalities and a multi-level discrimination module for hierarchical feature domain alignment. The proposed self-correction learning process adaptively aggregates the learned model and corresponding pseudo labels for the propagation of aligned source and target domain information to alleviate the overfitting to noises caused by pseudo labels. Extensive experiments over three publicly available COVID-19 CT datasets demonstrate that DASC-Net consistently outperforms state-of-the-art segmentation, domain shift, and coronavirus infection segmentation methods. Ablation analysis further shows the effectiveness of the major components in our model. The DASC-Net enriches the theory of domain adaptation and self-correction learning in medical imaging and can be generalized to multi-site COVID-19 infection segmentation on CT images for clinical deployment. |
format | Online Article Text |
id | pubmed-7954643 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79546432021-03-15 Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images Jin, Qiangguo Cui, Hui Sun, Changming Meng, Zhaopeng Wei, Leyi Su, Ran Expert Syst Appl Article The capability of generalization to unseen domains is crucial for deep learning models when considering real-world scenarios. However, current available medical image datasets, such as those for COVID-19 CT images, have large variations of infections and domain shift problems. To address this issue, we propose a prior knowledge driven domain adaptation and a dual-domain enhanced self-correction learning scheme. Based on the novel learning scheme, a domain adaptation based self-correction model (DASC-Net) is proposed for COVID-19 infection segmentation on CT images. DASC-Net consists of a novel attention and feature domain enhanced domain adaptation model (AFD-DA) to solve the domain shifts and a self-correction learning process to refine segmentation results. The innovations in AFD-DA include an image-level activation feature extractor with attention to lung abnormalities and a multi-level discrimination module for hierarchical feature domain alignment. The proposed self-correction learning process adaptively aggregates the learned model and corresponding pseudo labels for the propagation of aligned source and target domain information to alleviate the overfitting to noises caused by pseudo labels. Extensive experiments over three publicly available COVID-19 CT datasets demonstrate that DASC-Net consistently outperforms state-of-the-art segmentation, domain shift, and coronavirus infection segmentation methods. Ablation analysis further shows the effectiveness of the major components in our model. The DASC-Net enriches the theory of domain adaptation and self-correction learning in medical imaging and can be generalized to multi-site COVID-19 infection segmentation on CT images for clinical deployment. Elsevier Ltd. 2021-08-15 2021-03-13 /pmc/articles/PMC7954643/ /pubmed/33746369 http://dx.doi.org/10.1016/j.eswa.2021.114848 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Jin, Qiangguo Cui, Hui Sun, Changming Meng, Zhaopeng Wei, Leyi Su, Ran Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images |
title | Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images |
title_full | Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images |
title_fullStr | Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images |
title_full_unstemmed | Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images |
title_short | Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images |
title_sort | domain adaptation based self-correction model for covid-19 infection segmentation in ct images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954643/ https://www.ncbi.nlm.nih.gov/pubmed/33746369 http://dx.doi.org/10.1016/j.eswa.2021.114848 |
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