Cargando…

Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images

The capability of generalization to unseen domains is crucial for deep learning models when considering real-world scenarios. However, current available medical image datasets, such as those for COVID-19 CT images, have large variations of infections and domain shift problems. To address this issue,...

Descripción completa

Detalles Bibliográficos
Autores principales: Jin, Qiangguo, Cui, Hui, Sun, Changming, Meng, Zhaopeng, Wei, Leyi, Su, Ran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954643/
https://www.ncbi.nlm.nih.gov/pubmed/33746369
http://dx.doi.org/10.1016/j.eswa.2021.114848
_version_ 1783664117593145344
author Jin, Qiangguo
Cui, Hui
Sun, Changming
Meng, Zhaopeng
Wei, Leyi
Su, Ran
author_facet Jin, Qiangguo
Cui, Hui
Sun, Changming
Meng, Zhaopeng
Wei, Leyi
Su, Ran
author_sort Jin, Qiangguo
collection PubMed
description The capability of generalization to unseen domains is crucial for deep learning models when considering real-world scenarios. However, current available medical image datasets, such as those for COVID-19 CT images, have large variations of infections and domain shift problems. To address this issue, we propose a prior knowledge driven domain adaptation and a dual-domain enhanced self-correction learning scheme. Based on the novel learning scheme, a domain adaptation based self-correction model (DASC-Net) is proposed for COVID-19 infection segmentation on CT images. DASC-Net consists of a novel attention and feature domain enhanced domain adaptation model (AFD-DA) to solve the domain shifts and a self-correction learning process to refine segmentation results. The innovations in AFD-DA include an image-level activation feature extractor with attention to lung abnormalities and a multi-level discrimination module for hierarchical feature domain alignment. The proposed self-correction learning process adaptively aggregates the learned model and corresponding pseudo labels for the propagation of aligned source and target domain information to alleviate the overfitting to noises caused by pseudo labels. Extensive experiments over three publicly available COVID-19 CT datasets demonstrate that DASC-Net consistently outperforms state-of-the-art segmentation, domain shift, and coronavirus infection segmentation methods. Ablation analysis further shows the effectiveness of the major components in our model. The DASC-Net enriches the theory of domain adaptation and self-correction learning in medical imaging and can be generalized to multi-site COVID-19 infection segmentation on CT images for clinical deployment.
format Online
Article
Text
id pubmed-7954643
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier Ltd.
record_format MEDLINE/PubMed
spelling pubmed-79546432021-03-15 Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images Jin, Qiangguo Cui, Hui Sun, Changming Meng, Zhaopeng Wei, Leyi Su, Ran Expert Syst Appl Article The capability of generalization to unseen domains is crucial for deep learning models when considering real-world scenarios. However, current available medical image datasets, such as those for COVID-19 CT images, have large variations of infections and domain shift problems. To address this issue, we propose a prior knowledge driven domain adaptation and a dual-domain enhanced self-correction learning scheme. Based on the novel learning scheme, a domain adaptation based self-correction model (DASC-Net) is proposed for COVID-19 infection segmentation on CT images. DASC-Net consists of a novel attention and feature domain enhanced domain adaptation model (AFD-DA) to solve the domain shifts and a self-correction learning process to refine segmentation results. The innovations in AFD-DA include an image-level activation feature extractor with attention to lung abnormalities and a multi-level discrimination module for hierarchical feature domain alignment. The proposed self-correction learning process adaptively aggregates the learned model and corresponding pseudo labels for the propagation of aligned source and target domain information to alleviate the overfitting to noises caused by pseudo labels. Extensive experiments over three publicly available COVID-19 CT datasets demonstrate that DASC-Net consistently outperforms state-of-the-art segmentation, domain shift, and coronavirus infection segmentation methods. Ablation analysis further shows the effectiveness of the major components in our model. The DASC-Net enriches the theory of domain adaptation and self-correction learning in medical imaging and can be generalized to multi-site COVID-19 infection segmentation on CT images for clinical deployment. Elsevier Ltd. 2021-08-15 2021-03-13 /pmc/articles/PMC7954643/ /pubmed/33746369 http://dx.doi.org/10.1016/j.eswa.2021.114848 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Jin, Qiangguo
Cui, Hui
Sun, Changming
Meng, Zhaopeng
Wei, Leyi
Su, Ran
Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images
title Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images
title_full Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images
title_fullStr Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images
title_full_unstemmed Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images
title_short Domain adaptation based self-correction model for COVID-19 infection segmentation in CT images
title_sort domain adaptation based self-correction model for covid-19 infection segmentation in ct images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954643/
https://www.ncbi.nlm.nih.gov/pubmed/33746369
http://dx.doi.org/10.1016/j.eswa.2021.114848
work_keys_str_mv AT jinqiangguo domainadaptationbasedselfcorrectionmodelforcovid19infectionsegmentationinctimages
AT cuihui domainadaptationbasedselfcorrectionmodelforcovid19infectionsegmentationinctimages
AT sunchangming domainadaptationbasedselfcorrectionmodelforcovid19infectionsegmentationinctimages
AT mengzhaopeng domainadaptationbasedselfcorrectionmodelforcovid19infectionsegmentationinctimages
AT weileyi domainadaptationbasedselfcorrectionmodelforcovid19infectionsegmentationinctimages
AT suran domainadaptationbasedselfcorrectionmodelforcovid19infectionsegmentationinctimages