Cargando…

The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective

Chest X-ray imaging technology used for the early detection and screening of COVID-19 pneumonia is both accessible worldwide and affordable compared to other non-invasive technologies. Additionally, deep learning methods have recently shown remarkable results in detecting COVID-19 on chest X-rays, m...

Descripción completa

Detalles Bibliográficos
Autores principales: Elgendi, Mohamed, Nasir, Muhammad Umer, Tang, Qunfeng, Smith, David, Grenier, John-Paul, Batte, Catherine, Spieler, Bradley, Leslie, William Donald, Menon, Carlo, Fletcher, Richard Ribbon, Howard, Newton, Ward, Rabab, Parker, William, Nicolaou, Savvas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7956964/
https://www.ncbi.nlm.nih.gov/pubmed/33732718
http://dx.doi.org/10.3389/fmed.2021.629134
_version_ 1783664553297444864
author Elgendi, Mohamed
Nasir, Muhammad Umer
Tang, Qunfeng
Smith, David
Grenier, John-Paul
Batte, Catherine
Spieler, Bradley
Leslie, William Donald
Menon, Carlo
Fletcher, Richard Ribbon
Howard, Newton
Ward, Rabab
Parker, William
Nicolaou, Savvas
author_facet Elgendi, Mohamed
Nasir, Muhammad Umer
Tang, Qunfeng
Smith, David
Grenier, John-Paul
Batte, Catherine
Spieler, Bradley
Leslie, William Donald
Menon, Carlo
Fletcher, Richard Ribbon
Howard, Newton
Ward, Rabab
Parker, William
Nicolaou, Savvas
author_sort Elgendi, Mohamed
collection PubMed
description Chest X-ray imaging technology used for the early detection and screening of COVID-19 pneumonia is both accessible worldwide and affordable compared to other non-invasive technologies. Additionally, deep learning methods have recently shown remarkable results in detecting COVID-19 on chest X-rays, making it a promising screening technology for COVID-19. Deep learning relies on a large amount of data to avoid overfitting. While overfitting can result in perfect modeling on the original training dataset, on a new testing dataset it can fail to achieve high accuracy. In the image processing field, an image augmentation step (i.e., adding more training data) is often used to reduce overfitting on the training dataset, and improve prediction accuracy on the testing dataset. In this paper, we examined the impact of geometric augmentations as implemented in several recent publications for detecting COVID-19. We compared the performance of 17 deep learning algorithms with and without different geometric augmentations. We empirically examined the influence of augmentation with respect to detection accuracy, dataset diversity, augmentation methodology, and network size. Contrary to expectation, our results show that the removal of recently used geometrical augmentation steps actually improved the Matthews correlation coefficient (MCC) of 17 models. The MCC without augmentation (MCC = 0.51) outperformed four recent geometrical augmentations (MCC = 0.47 for Data Augmentation 1, MCC = 0.44 for Data Augmentation 2, MCC = 0.48 for Data Augmentation 3, and MCC = 0.49 for Data Augmentation 4). When we retrained a recently published deep learning without augmentation on the same dataset, the detection accuracy significantly increased, with a [Formula: see text] and a p-value of 2.23 × 10(−37). This is an interesting finding that may improve current deep learning algorithms using geometrical augmentations for detecting COVID-19. We also provide clinical perspectives on geometric augmentation to consider regarding the development of a robust COVID-19 X-ray-based detector.
format Online
Article
Text
id pubmed-7956964
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-79569642021-03-16 The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective Elgendi, Mohamed Nasir, Muhammad Umer Tang, Qunfeng Smith, David Grenier, John-Paul Batte, Catherine Spieler, Bradley Leslie, William Donald Menon, Carlo Fletcher, Richard Ribbon Howard, Newton Ward, Rabab Parker, William Nicolaou, Savvas Front Med (Lausanne) Medicine Chest X-ray imaging technology used for the early detection and screening of COVID-19 pneumonia is both accessible worldwide and affordable compared to other non-invasive technologies. Additionally, deep learning methods have recently shown remarkable results in detecting COVID-19 on chest X-rays, making it a promising screening technology for COVID-19. Deep learning relies on a large amount of data to avoid overfitting. While overfitting can result in perfect modeling on the original training dataset, on a new testing dataset it can fail to achieve high accuracy. In the image processing field, an image augmentation step (i.e., adding more training data) is often used to reduce overfitting on the training dataset, and improve prediction accuracy on the testing dataset. In this paper, we examined the impact of geometric augmentations as implemented in several recent publications for detecting COVID-19. We compared the performance of 17 deep learning algorithms with and without different geometric augmentations. We empirically examined the influence of augmentation with respect to detection accuracy, dataset diversity, augmentation methodology, and network size. Contrary to expectation, our results show that the removal of recently used geometrical augmentation steps actually improved the Matthews correlation coefficient (MCC) of 17 models. The MCC without augmentation (MCC = 0.51) outperformed four recent geometrical augmentations (MCC = 0.47 for Data Augmentation 1, MCC = 0.44 for Data Augmentation 2, MCC = 0.48 for Data Augmentation 3, and MCC = 0.49 for Data Augmentation 4). When we retrained a recently published deep learning without augmentation on the same dataset, the detection accuracy significantly increased, with a [Formula: see text] and a p-value of 2.23 × 10(−37). This is an interesting finding that may improve current deep learning algorithms using geometrical augmentations for detecting COVID-19. We also provide clinical perspectives on geometric augmentation to consider regarding the development of a robust COVID-19 X-ray-based detector. Frontiers Media S.A. 2021-03-01 /pmc/articles/PMC7956964/ /pubmed/33732718 http://dx.doi.org/10.3389/fmed.2021.629134 Text en Copyright © 2021 Elgendi, Nasir, Tang, Smith, Grenier, Batte, Spieler, Leslie, Menon, Fletcher, Howard, Ward, Parker and Nicolaou. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Elgendi, Mohamed
Nasir, Muhammad Umer
Tang, Qunfeng
Smith, David
Grenier, John-Paul
Batte, Catherine
Spieler, Bradley
Leslie, William Donald
Menon, Carlo
Fletcher, Richard Ribbon
Howard, Newton
Ward, Rabab
Parker, William
Nicolaou, Savvas
The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective
title The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective
title_full The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective
title_fullStr The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective
title_full_unstemmed The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective
title_short The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective
title_sort effectiveness of image augmentation in deep learning networks for detecting covid-19: a geometric transformation perspective
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7956964/
https://www.ncbi.nlm.nih.gov/pubmed/33732718
http://dx.doi.org/10.3389/fmed.2021.629134
work_keys_str_mv AT elgendimohamed theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT nasirmuhammadumer theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT tangqunfeng theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT smithdavid theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT grenierjohnpaul theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT battecatherine theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT spielerbradley theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT lesliewilliamdonald theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT menoncarlo theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT fletcherrichardribbon theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT howardnewton theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT wardrabab theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT parkerwilliam theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT nicolaousavvas theeffectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT elgendimohamed effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT nasirmuhammadumer effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT tangqunfeng effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT smithdavid effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT grenierjohnpaul effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT battecatherine effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT spielerbradley effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT lesliewilliamdonald effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT menoncarlo effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT fletcherrichardribbon effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT howardnewton effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT wardrabab effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT parkerwilliam effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective
AT nicolaousavvas effectivenessofimageaugmentationindeeplearningnetworksfordetectingcovid19ageometrictransformationperspective