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A Comprehensive Analysis of Multilayer Community Detection Algorithms for Application to EEG-Based Brain Networks

Modular organization is an emergent property of brain networks, responsible for shaping communication processes and underpinning brain functioning. Moreover, brain networks are intrinsically multilayer since their attributes can vary across time, subjects, frequency, or other domains. Identifying th...

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Autores principales: Puxeddu, Maria Grazia, Petti, Manuela, Astolfi, Laura
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7956967/
https://www.ncbi.nlm.nih.gov/pubmed/33732115
http://dx.doi.org/10.3389/fnsys.2021.624183
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author Puxeddu, Maria Grazia
Petti, Manuela
Astolfi, Laura
author_facet Puxeddu, Maria Grazia
Petti, Manuela
Astolfi, Laura
author_sort Puxeddu, Maria Grazia
collection PubMed
description Modular organization is an emergent property of brain networks, responsible for shaping communication processes and underpinning brain functioning. Moreover, brain networks are intrinsically multilayer since their attributes can vary across time, subjects, frequency, or other domains. Identifying the modular structure in multilayer brain networks represents a gateway toward a deeper understanding of neural processes underlying cognition. Electroencephalographic (EEG) signals, thanks to their high temporal resolution, can give rise to multilayer networks able to follow the dynamics of brain activity. Despite this potential, the community organization has not yet been thoroughly investigated in brain networks estimated from EEG. Furthermore, at the state of the art, there is still no agreement about which algorithm is the most suitable to detect communities in multilayer brain networks, and a way to test and compare them all under a variety of conditions is lacking. In this work, we perform a comprehensive analysis of three algorithms at the state of the art for multilayer community detection (namely, genLouvain, DynMoga, and FacetNet) as compared with an approach based on the application of a single-layer clustering algorithm to each slice of the multilayer network. We test their ability to identify both steady and dynamic modular structures. We statistically evaluate their performances by means of ad hoc benchmark graphs characterized by properties covering a broad range of conditions in terms of graph density, number of clusters, noise level, and number of layers. The results of this simulation study aim to provide guidelines about the choice of the more appropriate algorithm according to the different properties of the brain network under examination. Finally, as a proof of concept, we show an application of the algorithms to real functional brain networks derived from EEG signals collected at rest with closed and open eyes. The test on real data provided results in agreement with the conclusions of the simulation study and confirmed the feasibility of multilayer analysis of EEG-based brain networks in both steady and dynamic conditions.
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spelling pubmed-79569672021-03-16 A Comprehensive Analysis of Multilayer Community Detection Algorithms for Application to EEG-Based Brain Networks Puxeddu, Maria Grazia Petti, Manuela Astolfi, Laura Front Syst Neurosci Neuroscience Modular organization is an emergent property of brain networks, responsible for shaping communication processes and underpinning brain functioning. Moreover, brain networks are intrinsically multilayer since their attributes can vary across time, subjects, frequency, or other domains. Identifying the modular structure in multilayer brain networks represents a gateway toward a deeper understanding of neural processes underlying cognition. Electroencephalographic (EEG) signals, thanks to their high temporal resolution, can give rise to multilayer networks able to follow the dynamics of brain activity. Despite this potential, the community organization has not yet been thoroughly investigated in brain networks estimated from EEG. Furthermore, at the state of the art, there is still no agreement about which algorithm is the most suitable to detect communities in multilayer brain networks, and a way to test and compare them all under a variety of conditions is lacking. In this work, we perform a comprehensive analysis of three algorithms at the state of the art for multilayer community detection (namely, genLouvain, DynMoga, and FacetNet) as compared with an approach based on the application of a single-layer clustering algorithm to each slice of the multilayer network. We test their ability to identify both steady and dynamic modular structures. We statistically evaluate their performances by means of ad hoc benchmark graphs characterized by properties covering a broad range of conditions in terms of graph density, number of clusters, noise level, and number of layers. The results of this simulation study aim to provide guidelines about the choice of the more appropriate algorithm according to the different properties of the brain network under examination. Finally, as a proof of concept, we show an application of the algorithms to real functional brain networks derived from EEG signals collected at rest with closed and open eyes. The test on real data provided results in agreement with the conclusions of the simulation study and confirmed the feasibility of multilayer analysis of EEG-based brain networks in both steady and dynamic conditions. Frontiers Media S.A. 2021-03-01 /pmc/articles/PMC7956967/ /pubmed/33732115 http://dx.doi.org/10.3389/fnsys.2021.624183 Text en Copyright © 2021 Puxeddu, Petti and Astolfi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Puxeddu, Maria Grazia
Petti, Manuela
Astolfi, Laura
A Comprehensive Analysis of Multilayer Community Detection Algorithms for Application to EEG-Based Brain Networks
title A Comprehensive Analysis of Multilayer Community Detection Algorithms for Application to EEG-Based Brain Networks
title_full A Comprehensive Analysis of Multilayer Community Detection Algorithms for Application to EEG-Based Brain Networks
title_fullStr A Comprehensive Analysis of Multilayer Community Detection Algorithms for Application to EEG-Based Brain Networks
title_full_unstemmed A Comprehensive Analysis of Multilayer Community Detection Algorithms for Application to EEG-Based Brain Networks
title_short A Comprehensive Analysis of Multilayer Community Detection Algorithms for Application to EEG-Based Brain Networks
title_sort comprehensive analysis of multilayer community detection algorithms for application to eeg-based brain networks
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7956967/
https://www.ncbi.nlm.nih.gov/pubmed/33732115
http://dx.doi.org/10.3389/fnsys.2021.624183
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