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Structural investigations, quantum mechanical studies on proton and metal affinity and biological activity predictions of selpercatinib

Cancer of the lungs and thyroid is particularly difficult to manage and treat. Notably, selpercatinib has recently been suggested as an effective drug to combat these diseases. The entire world is currently tackling the pandemic caused by the SARS-CoV-19 virus. Numerous pharmaceuticals have been eva...

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Autores principales: Al-Zaqri, Nabil, Pooventhiran, T., Alharthi, Fahad A., Bhattacharyya, Utsab, Thomas, Renjith
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7957184/
https://www.ncbi.nlm.nih.gov/pubmed/33746318
http://dx.doi.org/10.1016/j.molliq.2020.114765
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author Al-Zaqri, Nabil
Pooventhiran, T.
Alharthi, Fahad A.
Bhattacharyya, Utsab
Thomas, Renjith
author_facet Al-Zaqri, Nabil
Pooventhiran, T.
Alharthi, Fahad A.
Bhattacharyya, Utsab
Thomas, Renjith
author_sort Al-Zaqri, Nabil
collection PubMed
description Cancer of the lungs and thyroid is particularly difficult to manage and treat. Notably, selpercatinib has recently been suggested as an effective drug to combat these diseases. The entire world is currently tackling the pandemic caused by the SARS-CoV-19 virus. Numerous pharmaceuticals have been evaluated for the management of the disease caused by SARS-CoV-19 (i.e., COVID-19). In this study, selpercatinib was proposed as a potential inhibitor of different SARS-CoV-19 proteins. Several intriguing effects of the molecule were found during the conducted computational investigations. Selpercatinib could effectively act as a proton sponge and exhibited high proton affinity in solution. Moreover, it was able to form complexes with metal ions in aqueous solutions. Specifically, the compound displayed high affinity towards zinc ions, which are important for the prevention of virus multiplication inside human cells. However, due to their charge, zinc ions are not able to pass the lipid bilayer and enter the cell. Thus, it was determined that selpercatinib could act as an ionophore, effectively transporting active zinc ions into cells. Furthermore, various quantum mechanical analyses, including energy studies, evaluation of the reactivity parameters, examination of the electron localisation and delocalisation properties, as well as assessment of the nonlinear optical (NLO) properties and information entropy, were conducted herein. The performed docking studies (docking scores −9.3169, −9.1002, −8.1853 and −8.1222 kcal mol(−1)) demonstrated that selpercatinib strongly bound with four isolated SARS-CoV-2 proteins.
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spelling pubmed-79571842021-03-15 Structural investigations, quantum mechanical studies on proton and metal affinity and biological activity predictions of selpercatinib Al-Zaqri, Nabil Pooventhiran, T. Alharthi, Fahad A. Bhattacharyya, Utsab Thomas, Renjith J Mol Liq Article Cancer of the lungs and thyroid is particularly difficult to manage and treat. Notably, selpercatinib has recently been suggested as an effective drug to combat these diseases. The entire world is currently tackling the pandemic caused by the SARS-CoV-19 virus. Numerous pharmaceuticals have been evaluated for the management of the disease caused by SARS-CoV-19 (i.e., COVID-19). In this study, selpercatinib was proposed as a potential inhibitor of different SARS-CoV-19 proteins. Several intriguing effects of the molecule were found during the conducted computational investigations. Selpercatinib could effectively act as a proton sponge and exhibited high proton affinity in solution. Moreover, it was able to form complexes with metal ions in aqueous solutions. Specifically, the compound displayed high affinity towards zinc ions, which are important for the prevention of virus multiplication inside human cells. However, due to their charge, zinc ions are not able to pass the lipid bilayer and enter the cell. Thus, it was determined that selpercatinib could act as an ionophore, effectively transporting active zinc ions into cells. Furthermore, various quantum mechanical analyses, including energy studies, evaluation of the reactivity parameters, examination of the electron localisation and delocalisation properties, as well as assessment of the nonlinear optical (NLO) properties and information entropy, were conducted herein. The performed docking studies (docking scores −9.3169, −9.1002, −8.1853 and −8.1222 kcal mol(−1)) demonstrated that selpercatinib strongly bound with four isolated SARS-CoV-2 proteins. Elsevier B.V. 2021-03-01 2020-11-13 /pmc/articles/PMC7957184/ /pubmed/33746318 http://dx.doi.org/10.1016/j.molliq.2020.114765 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Al-Zaqri, Nabil
Pooventhiran, T.
Alharthi, Fahad A.
Bhattacharyya, Utsab
Thomas, Renjith
Structural investigations, quantum mechanical studies on proton and metal affinity and biological activity predictions of selpercatinib
title Structural investigations, quantum mechanical studies on proton and metal affinity and biological activity predictions of selpercatinib
title_full Structural investigations, quantum mechanical studies on proton and metal affinity and biological activity predictions of selpercatinib
title_fullStr Structural investigations, quantum mechanical studies on proton and metal affinity and biological activity predictions of selpercatinib
title_full_unstemmed Structural investigations, quantum mechanical studies on proton and metal affinity and biological activity predictions of selpercatinib
title_short Structural investigations, quantum mechanical studies on proton and metal affinity and biological activity predictions of selpercatinib
title_sort structural investigations, quantum mechanical studies on proton and metal affinity and biological activity predictions of selpercatinib
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7957184/
https://www.ncbi.nlm.nih.gov/pubmed/33746318
http://dx.doi.org/10.1016/j.molliq.2020.114765
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