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Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer

Ovarian cancer (OV) is the most common gynaecological cancer worldwide. Immunotherapy has recently been proven to be an effective treatment strategy. The work here attempts to produce a prognostic immune‐related gene pair (IRGP) signature to estimate OV patient survival. The Gene Expression Omnibus...

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Autores principales: Zhang, Bao, Nie, Xiaocui, Miao, Xinxin, Wang, Shuo, Li, Jing, Wang, Shengke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7957197/
https://www.ncbi.nlm.nih.gov/pubmed/33543590
http://dx.doi.org/10.1111/jcmm.16327
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author Zhang, Bao
Nie, Xiaocui
Miao, Xinxin
Wang, Shuo
Li, Jing
Wang, Shengke
author_facet Zhang, Bao
Nie, Xiaocui
Miao, Xinxin
Wang, Shuo
Li, Jing
Wang, Shengke
author_sort Zhang, Bao
collection PubMed
description Ovarian cancer (OV) is the most common gynaecological cancer worldwide. Immunotherapy has recently been proven to be an effective treatment strategy. The work here attempts to produce a prognostic immune‐related gene pair (IRGP) signature to estimate OV patient survival. The Gene Expression Omnibus (GEO) and Cancer Genome Atlas (TCGA) databases provided the genetic expression profiles and clinical data of OV patients. Based on the InnateDB database and the least absolute shrinkage and selection operator (LASSO) regression model, we first identified a 17‐IRGP signature associated with survival. The average area under the curve (AUC) values of the training, validation, and all TCGA sets were 0.869, 0.712, and 0.778, respectively. The 17‐IRGP signature noticeably split patients into high‐ and low‐risk groups with different prognostic outcomes. As suggested by a functional study, some biological pathways, including the Toll‐like receptor and chemokine signalling pathways, were significantly negatively correlated with risk scores; however, pathways such as the p53 and apoptosis signalling pathways had a positive correlation. Moreover, tumour stage III, IV, grade G1/G2, and G3/G4 samples had significant differences in risk scores. In conclusion, an effective 17‐IRGP signature was produced to predict prognostic outcomes in OV, providing new insights into immunological biomarkers.
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spelling pubmed-79571972021-03-19 Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer Zhang, Bao Nie, Xiaocui Miao, Xinxin Wang, Shuo Li, Jing Wang, Shengke J Cell Mol Med Original Articles Ovarian cancer (OV) is the most common gynaecological cancer worldwide. Immunotherapy has recently been proven to be an effective treatment strategy. The work here attempts to produce a prognostic immune‐related gene pair (IRGP) signature to estimate OV patient survival. The Gene Expression Omnibus (GEO) and Cancer Genome Atlas (TCGA) databases provided the genetic expression profiles and clinical data of OV patients. Based on the InnateDB database and the least absolute shrinkage and selection operator (LASSO) regression model, we first identified a 17‐IRGP signature associated with survival. The average area under the curve (AUC) values of the training, validation, and all TCGA sets were 0.869, 0.712, and 0.778, respectively. The 17‐IRGP signature noticeably split patients into high‐ and low‐risk groups with different prognostic outcomes. As suggested by a functional study, some biological pathways, including the Toll‐like receptor and chemokine signalling pathways, were significantly negatively correlated with risk scores; however, pathways such as the p53 and apoptosis signalling pathways had a positive correlation. Moreover, tumour stage III, IV, grade G1/G2, and G3/G4 samples had significant differences in risk scores. In conclusion, an effective 17‐IRGP signature was produced to predict prognostic outcomes in OV, providing new insights into immunological biomarkers. John Wiley and Sons Inc. 2021-02-04 2021-03 /pmc/articles/PMC7957197/ /pubmed/33543590 http://dx.doi.org/10.1111/jcmm.16327 Text en © 2021 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Zhang, Bao
Nie, Xiaocui
Miao, Xinxin
Wang, Shuo
Li, Jing
Wang, Shengke
Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer
title Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer
title_full Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer
title_fullStr Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer
title_full_unstemmed Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer
title_short Development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer
title_sort development and verification of an immune‐related gene pairs prognostic signature in ovarian cancer
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7957197/
https://www.ncbi.nlm.nih.gov/pubmed/33543590
http://dx.doi.org/10.1111/jcmm.16327
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