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Designing self-assembling kinetics with differentiable statistical physics models

The inverse problem of designing component interactions to target emergent structure is fundamental to numerous applications in biotechnology, materials science, and statistical physics. Equally important is the inverse problem of designing emergent kinetics, but this has received considerably less...

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Autores principales: Goodrich, Carl P., King, Ella M., Schoenholz, Samuel S., Cubuk, Ekin D., Brenner, Michael P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7958177/
https://www.ncbi.nlm.nih.gov/pubmed/33653960
http://dx.doi.org/10.1073/pnas.2024083118
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author Goodrich, Carl P.
King, Ella M.
Schoenholz, Samuel S.
Cubuk, Ekin D.
Brenner, Michael P.
author_facet Goodrich, Carl P.
King, Ella M.
Schoenholz, Samuel S.
Cubuk, Ekin D.
Brenner, Michael P.
author_sort Goodrich, Carl P.
collection PubMed
description The inverse problem of designing component interactions to target emergent structure is fundamental to numerous applications in biotechnology, materials science, and statistical physics. Equally important is the inverse problem of designing emergent kinetics, but this has received considerably less attention. Using recent advances in automatic differentiation, we show how kinetic pathways can be precisely designed by directly differentiating through statistical physics models, namely free energy calculations and molecular dynamics simulations. We consider two systems that are crucial to our understanding of structural self-assembly: bulk crystallization and small nanoclusters. In each case, we are able to assemble precise dynamical features. Using gradient information, we manipulate interactions among constituent particles to tune the rate at which these systems yield specific structures of interest. Moreover, we use this approach to learn nontrivial features about the high-dimensional design space, allowing us to accurately predict when multiple kinetic features can be simultaneously and independently controlled. These results provide a concrete and generalizable foundation for studying nonstructural self-assembly, including kinetic properties as well as other complex emergent properties, in a vast array of systems.
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spelling pubmed-79581772021-03-19 Designing self-assembling kinetics with differentiable statistical physics models Goodrich, Carl P. King, Ella M. Schoenholz, Samuel S. Cubuk, Ekin D. Brenner, Michael P. Proc Natl Acad Sci U S A Physical Sciences The inverse problem of designing component interactions to target emergent structure is fundamental to numerous applications in biotechnology, materials science, and statistical physics. Equally important is the inverse problem of designing emergent kinetics, but this has received considerably less attention. Using recent advances in automatic differentiation, we show how kinetic pathways can be precisely designed by directly differentiating through statistical physics models, namely free energy calculations and molecular dynamics simulations. We consider two systems that are crucial to our understanding of structural self-assembly: bulk crystallization and small nanoclusters. In each case, we are able to assemble precise dynamical features. Using gradient information, we manipulate interactions among constituent particles to tune the rate at which these systems yield specific structures of interest. Moreover, we use this approach to learn nontrivial features about the high-dimensional design space, allowing us to accurately predict when multiple kinetic features can be simultaneously and independently controlled. These results provide a concrete and generalizable foundation for studying nonstructural self-assembly, including kinetic properties as well as other complex emergent properties, in a vast array of systems. National Academy of Sciences 2021-03-09 2021-03-02 /pmc/articles/PMC7958177/ /pubmed/33653960 http://dx.doi.org/10.1073/pnas.2024083118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Physical Sciences
Goodrich, Carl P.
King, Ella M.
Schoenholz, Samuel S.
Cubuk, Ekin D.
Brenner, Michael P.
Designing self-assembling kinetics with differentiable statistical physics models
title Designing self-assembling kinetics with differentiable statistical physics models
title_full Designing self-assembling kinetics with differentiable statistical physics models
title_fullStr Designing self-assembling kinetics with differentiable statistical physics models
title_full_unstemmed Designing self-assembling kinetics with differentiable statistical physics models
title_short Designing self-assembling kinetics with differentiable statistical physics models
title_sort designing self-assembling kinetics with differentiable statistical physics models
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7958177/
https://www.ncbi.nlm.nih.gov/pubmed/33653960
http://dx.doi.org/10.1073/pnas.2024083118
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