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COVID-19: a new deep learning computer-aided model for classification

Chest X-ray (CXR) imaging is one of the most feasible diagnosis modalities for early detection of the infection of COVID-19 viruses, which is classified as a pandemic according to the World Health Organization (WHO) report in December 2019. COVID-19 is a rapid natural mutual virus that belongs to th...

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Autores principales: Elzeki, Omar M., Shams, Mahmoud, Sarhan, Shahenda, Abd Elfattah, Mohamed, Hassanien, Aboul Ella
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7959596/
https://www.ncbi.nlm.nih.gov/pubmed/33817008
http://dx.doi.org/10.7717/peerj-cs.358
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author Elzeki, Omar M.
Shams, Mahmoud
Sarhan, Shahenda
Abd Elfattah, Mohamed
Hassanien, Aboul Ella
author_facet Elzeki, Omar M.
Shams, Mahmoud
Sarhan, Shahenda
Abd Elfattah, Mohamed
Hassanien, Aboul Ella
author_sort Elzeki, Omar M.
collection PubMed
description Chest X-ray (CXR) imaging is one of the most feasible diagnosis modalities for early detection of the infection of COVID-19 viruses, which is classified as a pandemic according to the World Health Organization (WHO) report in December 2019. COVID-19 is a rapid natural mutual virus that belongs to the coronavirus family. CXR scans are one of the vital tools to early detect COVID-19 to monitor further and control its virus spread. Classification of COVID-19 aims to detect whether a subject is infected or not. In this article, a model is proposed for analyzing and evaluating grayscale CXR images called Chest X-Ray COVID Network (CXRVN) based on three different COVID-19 X-Ray datasets. The proposed CXRVN model is a lightweight architecture that depends on a single fully connected layer representing the essential features and thus reducing the total memory usage and processing time verse pre-trained models and others. The CXRVN adopts two optimizers: mini-batch gradient descent and Adam optimizer, and the model has almost the same performance. Besides, CXRVN accepts CXR images in grayscale that are a perfect image representation for CXR and consume less memory storage and processing time. Hence, CXRVN can analyze the CXR image with high accuracy in a few milliseconds. The consequences of the learning process focus on decision making using a scoring function called SoftMax that leads to high rate true-positive classification. The CXRVN model is trained using three different datasets and compared to the pre-trained models: GoogleNet, ResNet and AlexNet, using the fine-tuning and transfer learning technologies for the evaluation process. To verify the effectiveness of the CXRVN model, it was evaluated in terms of the well-known performance measures such as precision, sensitivity, F1-score and accuracy. The evaluation results based on sensitivity, precision, recall, accuracy, and F1 score demonstrated that, after GAN augmentation, the accuracy reached 96.7% in experiment 2 (Dataset-2) for two classes and 93.07% in experiment-3 (Dataset-3) for three classes, while the average accuracy of the proposed CXRVN model is 94.5%.
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spelling pubmed-79595962021-04-02 COVID-19: a new deep learning computer-aided model for classification Elzeki, Omar M. Shams, Mahmoud Sarhan, Shahenda Abd Elfattah, Mohamed Hassanien, Aboul Ella PeerJ Comput Sci Bioinformatics Chest X-ray (CXR) imaging is one of the most feasible diagnosis modalities for early detection of the infection of COVID-19 viruses, which is classified as a pandemic according to the World Health Organization (WHO) report in December 2019. COVID-19 is a rapid natural mutual virus that belongs to the coronavirus family. CXR scans are one of the vital tools to early detect COVID-19 to monitor further and control its virus spread. Classification of COVID-19 aims to detect whether a subject is infected or not. In this article, a model is proposed for analyzing and evaluating grayscale CXR images called Chest X-Ray COVID Network (CXRVN) based on three different COVID-19 X-Ray datasets. The proposed CXRVN model is a lightweight architecture that depends on a single fully connected layer representing the essential features and thus reducing the total memory usage and processing time verse pre-trained models and others. The CXRVN adopts two optimizers: mini-batch gradient descent and Adam optimizer, and the model has almost the same performance. Besides, CXRVN accepts CXR images in grayscale that are a perfect image representation for CXR and consume less memory storage and processing time. Hence, CXRVN can analyze the CXR image with high accuracy in a few milliseconds. The consequences of the learning process focus on decision making using a scoring function called SoftMax that leads to high rate true-positive classification. The CXRVN model is trained using three different datasets and compared to the pre-trained models: GoogleNet, ResNet and AlexNet, using the fine-tuning and transfer learning technologies for the evaluation process. To verify the effectiveness of the CXRVN model, it was evaluated in terms of the well-known performance measures such as precision, sensitivity, F1-score and accuracy. The evaluation results based on sensitivity, precision, recall, accuracy, and F1 score demonstrated that, after GAN augmentation, the accuracy reached 96.7% in experiment 2 (Dataset-2) for two classes and 93.07% in experiment-3 (Dataset-3) for three classes, while the average accuracy of the proposed CXRVN model is 94.5%. PeerJ Inc. 2021-02-18 /pmc/articles/PMC7959596/ /pubmed/33817008 http://dx.doi.org/10.7717/peerj-cs.358 Text en © 2021 Elzeki et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Elzeki, Omar M.
Shams, Mahmoud
Sarhan, Shahenda
Abd Elfattah, Mohamed
Hassanien, Aboul Ella
COVID-19: a new deep learning computer-aided model for classification
title COVID-19: a new deep learning computer-aided model for classification
title_full COVID-19: a new deep learning computer-aided model for classification
title_fullStr COVID-19: a new deep learning computer-aided model for classification
title_full_unstemmed COVID-19: a new deep learning computer-aided model for classification
title_short COVID-19: a new deep learning computer-aided model for classification
title_sort covid-19: a new deep learning computer-aided model for classification
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7959596/
https://www.ncbi.nlm.nih.gov/pubmed/33817008
http://dx.doi.org/10.7717/peerj-cs.358
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