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Renyi entropy driven hierarchical graph clustering

This article explores a graph clustering method that is derived from an information theoretic method that clusters points in [Image: see text] relying on Renyi entropy, which involves computing the usual Euclidean distance between these points. Two view points are adopted: (1) the graph to be cluste...

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Detalles Bibliográficos
Autores principales: Oggier, Frédérique, Datta, Anwitaman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7959621/
https://www.ncbi.nlm.nih.gov/pubmed/33817016
http://dx.doi.org/10.7717/peerj-cs.366
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author Oggier, Frédérique
Datta, Anwitaman
author_facet Oggier, Frédérique
Datta, Anwitaman
author_sort Oggier, Frédérique
collection PubMed
description This article explores a graph clustering method that is derived from an information theoretic method that clusters points in [Image: see text] relying on Renyi entropy, which involves computing the usual Euclidean distance between these points. Two view points are adopted: (1) the graph to be clustered is first embedded into [Image: see text] for some dimension d so as to minimize the distortion of the embedding, then the resulting points are clustered, and (2) the graph is clustered directly, using as distance the shortest path distance for undirected graphs, and a variation of the Jaccard distance for directed graphs. In both cases, a hierarchical approach is adopted, where both the initial clustering and the agglomeration steps are computed using Renyi entropy derived evaluation functions. Numerical examples are provided to support the study, showing the consistency of both approaches (evaluated in terms of F-scores).
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spelling pubmed-79596212021-04-02 Renyi entropy driven hierarchical graph clustering Oggier, Frédérique Datta, Anwitaman PeerJ Comput Sci Data Science This article explores a graph clustering method that is derived from an information theoretic method that clusters points in [Image: see text] relying on Renyi entropy, which involves computing the usual Euclidean distance between these points. Two view points are adopted: (1) the graph to be clustered is first embedded into [Image: see text] for some dimension d so as to minimize the distortion of the embedding, then the resulting points are clustered, and (2) the graph is clustered directly, using as distance the shortest path distance for undirected graphs, and a variation of the Jaccard distance for directed graphs. In both cases, a hierarchical approach is adopted, where both the initial clustering and the agglomeration steps are computed using Renyi entropy derived evaluation functions. Numerical examples are provided to support the study, showing the consistency of both approaches (evaluated in terms of F-scores). PeerJ Inc. 2021-02-25 /pmc/articles/PMC7959621/ /pubmed/33817016 http://dx.doi.org/10.7717/peerj-cs.366 Text en © 2021 Oggier and Datta https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Data Science
Oggier, Frédérique
Datta, Anwitaman
Renyi entropy driven hierarchical graph clustering
title Renyi entropy driven hierarchical graph clustering
title_full Renyi entropy driven hierarchical graph clustering
title_fullStr Renyi entropy driven hierarchical graph clustering
title_full_unstemmed Renyi entropy driven hierarchical graph clustering
title_short Renyi entropy driven hierarchical graph clustering
title_sort renyi entropy driven hierarchical graph clustering
topic Data Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7959621/
https://www.ncbi.nlm.nih.gov/pubmed/33817016
http://dx.doi.org/10.7717/peerj-cs.366
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AT dattaanwitaman renyientropydrivenhierarchicalgraphclustering