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Renyi entropy driven hierarchical graph clustering
This article explores a graph clustering method that is derived from an information theoretic method that clusters points in [Image: see text] relying on Renyi entropy, which involves computing the usual Euclidean distance between these points. Two view points are adopted: (1) the graph to be cluste...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7959621/ https://www.ncbi.nlm.nih.gov/pubmed/33817016 http://dx.doi.org/10.7717/peerj-cs.366 |
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author | Oggier, Frédérique Datta, Anwitaman |
author_facet | Oggier, Frédérique Datta, Anwitaman |
author_sort | Oggier, Frédérique |
collection | PubMed |
description | This article explores a graph clustering method that is derived from an information theoretic method that clusters points in [Image: see text] relying on Renyi entropy, which involves computing the usual Euclidean distance between these points. Two view points are adopted: (1) the graph to be clustered is first embedded into [Image: see text] for some dimension d so as to minimize the distortion of the embedding, then the resulting points are clustered, and (2) the graph is clustered directly, using as distance the shortest path distance for undirected graphs, and a variation of the Jaccard distance for directed graphs. In both cases, a hierarchical approach is adopted, where both the initial clustering and the agglomeration steps are computed using Renyi entropy derived evaluation functions. Numerical examples are provided to support the study, showing the consistency of both approaches (evaluated in terms of F-scores). |
format | Online Article Text |
id | pubmed-7959621 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79596212021-04-02 Renyi entropy driven hierarchical graph clustering Oggier, Frédérique Datta, Anwitaman PeerJ Comput Sci Data Science This article explores a graph clustering method that is derived from an information theoretic method that clusters points in [Image: see text] relying on Renyi entropy, which involves computing the usual Euclidean distance between these points. Two view points are adopted: (1) the graph to be clustered is first embedded into [Image: see text] for some dimension d so as to minimize the distortion of the embedding, then the resulting points are clustered, and (2) the graph is clustered directly, using as distance the shortest path distance for undirected graphs, and a variation of the Jaccard distance for directed graphs. In both cases, a hierarchical approach is adopted, where both the initial clustering and the agglomeration steps are computed using Renyi entropy derived evaluation functions. Numerical examples are provided to support the study, showing the consistency of both approaches (evaluated in terms of F-scores). PeerJ Inc. 2021-02-25 /pmc/articles/PMC7959621/ /pubmed/33817016 http://dx.doi.org/10.7717/peerj-cs.366 Text en © 2021 Oggier and Datta https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. |
spellingShingle | Data Science Oggier, Frédérique Datta, Anwitaman Renyi entropy driven hierarchical graph clustering |
title | Renyi entropy driven hierarchical graph clustering |
title_full | Renyi entropy driven hierarchical graph clustering |
title_fullStr | Renyi entropy driven hierarchical graph clustering |
title_full_unstemmed | Renyi entropy driven hierarchical graph clustering |
title_short | Renyi entropy driven hierarchical graph clustering |
title_sort | renyi entropy driven hierarchical graph clustering |
topic | Data Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7959621/ https://www.ncbi.nlm.nih.gov/pubmed/33817016 http://dx.doi.org/10.7717/peerj-cs.366 |
work_keys_str_mv | AT oggierfrederique renyientropydrivenhierarchicalgraphclustering AT dattaanwitaman renyientropydrivenhierarchicalgraphclustering |