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Performance analysis of lightweight CNN models to segment infectious lung tissues of COVID-19 cases from tomographic images

The pandemic of Coronavirus Disease-19 (COVID-19) has spread around the world, causing an existential health crisis. Automated detection of COVID-19 infections in the lungs from Computed Tomography (CT) images offers huge potential in tackling the problem of slow detection and augments the conventio...

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Autores principales: Iyer, Tharun J., Joseph Raj, Alex Noel, Ghildiyal, Sushil, Nersisson, Ruban
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7959645/
https://www.ncbi.nlm.nih.gov/pubmed/33817018
http://dx.doi.org/10.7717/peerj-cs.368
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author Iyer, Tharun J.
Joseph Raj, Alex Noel
Ghildiyal, Sushil
Nersisson, Ruban
author_facet Iyer, Tharun J.
Joseph Raj, Alex Noel
Ghildiyal, Sushil
Nersisson, Ruban
author_sort Iyer, Tharun J.
collection PubMed
description The pandemic of Coronavirus Disease-19 (COVID-19) has spread around the world, causing an existential health crisis. Automated detection of COVID-19 infections in the lungs from Computed Tomography (CT) images offers huge potential in tackling the problem of slow detection and augments the conventional diagnostic procedures. However, segmenting COVID-19 from CT Scans is problematic, due to high variations in the types of infections and low contrast between healthy and infected tissues. While segmenting Lung CT Scans for COVID-19, fast and accurate results are required and furthermore, due to the pandemic, most of the research community has opted for various cloud based servers such as Google Colab, etc. to develop their algorithms. High accuracy can be achieved using Deep Networks but the prediction time would vary as the resources are shared amongst many thus requiring the need to compare different lightweight segmentation model. To address this issue, we aim to analyze the segmentation of COVID-19 using four Convolutional Neural Networks (CNN). The images in our dataset are preprocessed where the motion artifacts are removed. The four networks are UNet, Segmentation Network (Seg Net), High-Resolution Network (HR Net) and VGG UNet. Trained on our dataset of more than 3,000 images, HR Net was found to be the best performing network achieving an accuracy of 96.24% and a Dice score of 0.9127. The analysis shows that lightweight CNN models perform better than other neural net models when to segment infectious tissue due to COVID-19 from CT slices.
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spelling pubmed-79596452021-04-02 Performance analysis of lightweight CNN models to segment infectious lung tissues of COVID-19 cases from tomographic images Iyer, Tharun J. Joseph Raj, Alex Noel Ghildiyal, Sushil Nersisson, Ruban PeerJ Comput Sci Algorithms and Analysis of Algorithms The pandemic of Coronavirus Disease-19 (COVID-19) has spread around the world, causing an existential health crisis. Automated detection of COVID-19 infections in the lungs from Computed Tomography (CT) images offers huge potential in tackling the problem of slow detection and augments the conventional diagnostic procedures. However, segmenting COVID-19 from CT Scans is problematic, due to high variations in the types of infections and low contrast between healthy and infected tissues. While segmenting Lung CT Scans for COVID-19, fast and accurate results are required and furthermore, due to the pandemic, most of the research community has opted for various cloud based servers such as Google Colab, etc. to develop their algorithms. High accuracy can be achieved using Deep Networks but the prediction time would vary as the resources are shared amongst many thus requiring the need to compare different lightweight segmentation model. To address this issue, we aim to analyze the segmentation of COVID-19 using four Convolutional Neural Networks (CNN). The images in our dataset are preprocessed where the motion artifacts are removed. The four networks are UNet, Segmentation Network (Seg Net), High-Resolution Network (HR Net) and VGG UNet. Trained on our dataset of more than 3,000 images, HR Net was found to be the best performing network achieving an accuracy of 96.24% and a Dice score of 0.9127. The analysis shows that lightweight CNN models perform better than other neural net models when to segment infectious tissue due to COVID-19 from CT slices. PeerJ Inc. 2021-02-22 /pmc/articles/PMC7959645/ /pubmed/33817018 http://dx.doi.org/10.7717/peerj-cs.368 Text en © 2021 Iyer et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Algorithms and Analysis of Algorithms
Iyer, Tharun J.
Joseph Raj, Alex Noel
Ghildiyal, Sushil
Nersisson, Ruban
Performance analysis of lightweight CNN models to segment infectious lung tissues of COVID-19 cases from tomographic images
title Performance analysis of lightweight CNN models to segment infectious lung tissues of COVID-19 cases from tomographic images
title_full Performance analysis of lightweight CNN models to segment infectious lung tissues of COVID-19 cases from tomographic images
title_fullStr Performance analysis of lightweight CNN models to segment infectious lung tissues of COVID-19 cases from tomographic images
title_full_unstemmed Performance analysis of lightweight CNN models to segment infectious lung tissues of COVID-19 cases from tomographic images
title_short Performance analysis of lightweight CNN models to segment infectious lung tissues of COVID-19 cases from tomographic images
title_sort performance analysis of lightweight cnn models to segment infectious lung tissues of covid-19 cases from tomographic images
topic Algorithms and Analysis of Algorithms
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7959645/
https://www.ncbi.nlm.nih.gov/pubmed/33817018
http://dx.doi.org/10.7717/peerj-cs.368
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