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A Raman algorithm to estimate human age from protein structural variations in autopsy skin samples: a protein biological clock

The recent increase of the number of unidentified cadavers has become a serious problem throughout the world. As a simple and objective method for age estimation, we attempted to utilize Raman spectrometry for forensic identification. Raman spectroscopy is an optical-based vibrational spectroscopic...

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Autores principales: Miyamori, Daisuke, Uemura, Takeshi, Zhu, Wenliang, Fujikawa, Kei, Nakaya, Takaaki, Teramukai, Satoshi, Pezzotti, Giuseppe, Ikegaya, Hiroshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7960715/
https://www.ncbi.nlm.nih.gov/pubmed/33723323
http://dx.doi.org/10.1038/s41598-021-85371-7
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author Miyamori, Daisuke
Uemura, Takeshi
Zhu, Wenliang
Fujikawa, Kei
Nakaya, Takaaki
Teramukai, Satoshi
Pezzotti, Giuseppe
Ikegaya, Hiroshi
author_facet Miyamori, Daisuke
Uemura, Takeshi
Zhu, Wenliang
Fujikawa, Kei
Nakaya, Takaaki
Teramukai, Satoshi
Pezzotti, Giuseppe
Ikegaya, Hiroshi
author_sort Miyamori, Daisuke
collection PubMed
description The recent increase of the number of unidentified cadavers has become a serious problem throughout the world. As a simple and objective method for age estimation, we attempted to utilize Raman spectrometry for forensic identification. Raman spectroscopy is an optical-based vibrational spectroscopic technique that provides detailed information regarding a sample’s molecular composition and structures. Building upon our previous proof-of-concept study, we measured the Raman spectra of abdominal skin samples from 132 autopsy cases and the protein-folding intensity ratio, R(PF), defined as the ratio between the Raman signals from a random coil an α-helix. There was a strong negative correlation between age and R(PF) with a Pearson correlation coefficient of r = 0.878. Four models, based on linear (R(PF)), squared (R(PF)(2)), sex, and R(PF) by sex interaction terms, were examined. The results of cross validation suggested that the second model including linear and squared terms was the best model with the lowest root mean squared error (11.3 years of age) and the highest coefficient of determination (0.743). Our results indicate that the there was a high correlation between the age and R(PF) and the Raman biological clock of protein folding can be used as a simple and objective forensic age estimation method for unidentified cadavers.
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spelling pubmed-79607152021-03-19 A Raman algorithm to estimate human age from protein structural variations in autopsy skin samples: a protein biological clock Miyamori, Daisuke Uemura, Takeshi Zhu, Wenliang Fujikawa, Kei Nakaya, Takaaki Teramukai, Satoshi Pezzotti, Giuseppe Ikegaya, Hiroshi Sci Rep Article The recent increase of the number of unidentified cadavers has become a serious problem throughout the world. As a simple and objective method for age estimation, we attempted to utilize Raman spectrometry for forensic identification. Raman spectroscopy is an optical-based vibrational spectroscopic technique that provides detailed information regarding a sample’s molecular composition and structures. Building upon our previous proof-of-concept study, we measured the Raman spectra of abdominal skin samples from 132 autopsy cases and the protein-folding intensity ratio, R(PF), defined as the ratio between the Raman signals from a random coil an α-helix. There was a strong negative correlation between age and R(PF) with a Pearson correlation coefficient of r = 0.878. Four models, based on linear (R(PF)), squared (R(PF)(2)), sex, and R(PF) by sex interaction terms, were examined. The results of cross validation suggested that the second model including linear and squared terms was the best model with the lowest root mean squared error (11.3 years of age) and the highest coefficient of determination (0.743). Our results indicate that the there was a high correlation between the age and R(PF) and the Raman biological clock of protein folding can be used as a simple and objective forensic age estimation method for unidentified cadavers. Nature Publishing Group UK 2021-03-15 /pmc/articles/PMC7960715/ /pubmed/33723323 http://dx.doi.org/10.1038/s41598-021-85371-7 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Miyamori, Daisuke
Uemura, Takeshi
Zhu, Wenliang
Fujikawa, Kei
Nakaya, Takaaki
Teramukai, Satoshi
Pezzotti, Giuseppe
Ikegaya, Hiroshi
A Raman algorithm to estimate human age from protein structural variations in autopsy skin samples: a protein biological clock
title A Raman algorithm to estimate human age from protein structural variations in autopsy skin samples: a protein biological clock
title_full A Raman algorithm to estimate human age from protein structural variations in autopsy skin samples: a protein biological clock
title_fullStr A Raman algorithm to estimate human age from protein structural variations in autopsy skin samples: a protein biological clock
title_full_unstemmed A Raman algorithm to estimate human age from protein structural variations in autopsy skin samples: a protein biological clock
title_short A Raman algorithm to estimate human age from protein structural variations in autopsy skin samples: a protein biological clock
title_sort raman algorithm to estimate human age from protein structural variations in autopsy skin samples: a protein biological clock
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7960715/
https://www.ncbi.nlm.nih.gov/pubmed/33723323
http://dx.doi.org/10.1038/s41598-021-85371-7
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