Cargando…

Cell size distribution of lineage data: analytic results and parameter inference

Recent advances in single-cell technologies have enabled time-resolved measurements of the cell size over several cell cycles. These data encode information on how cells correct size aberrations so that they do not grow abnormally large or small. Here, we formulate a piecewise deterministic Markov m...

Descripción completa

Detalles Bibliográficos
Autores principales: Jia, Chen, Singh, Abhyudai, Grima, Ramon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7961097/
https://www.ncbi.nlm.nih.gov/pubmed/33748708
http://dx.doi.org/10.1016/j.isci.2021.102220
_version_ 1783665184024297472
author Jia, Chen
Singh, Abhyudai
Grima, Ramon
author_facet Jia, Chen
Singh, Abhyudai
Grima, Ramon
author_sort Jia, Chen
collection PubMed
description Recent advances in single-cell technologies have enabled time-resolved measurements of the cell size over several cell cycles. These data encode information on how cells correct size aberrations so that they do not grow abnormally large or small. Here, we formulate a piecewise deterministic Markov model describing the evolution of the cell size over many generations, for all three cell size homeostasis strategies (timer, sizer, and adder). The model is solved to obtain an analytical expression for the non-Gaussian cell size distribution in a cell lineage; the theory is used to understand how the shape of the distribution is influenced by the parameters controlling the dynamics of the cell cycle and by the choice of cell tracking protocol. The theoretical cell size distribution is found to provide an excellent match to the experimental cell size distribution of E. coli lineage data collected under various growth conditions.
format Online
Article
Text
id pubmed-7961097
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-79610972021-03-19 Cell size distribution of lineage data: analytic results and parameter inference Jia, Chen Singh, Abhyudai Grima, Ramon iScience Article Recent advances in single-cell technologies have enabled time-resolved measurements of the cell size over several cell cycles. These data encode information on how cells correct size aberrations so that they do not grow abnormally large or small. Here, we formulate a piecewise deterministic Markov model describing the evolution of the cell size over many generations, for all three cell size homeostasis strategies (timer, sizer, and adder). The model is solved to obtain an analytical expression for the non-Gaussian cell size distribution in a cell lineage; the theory is used to understand how the shape of the distribution is influenced by the parameters controlling the dynamics of the cell cycle and by the choice of cell tracking protocol. The theoretical cell size distribution is found to provide an excellent match to the experimental cell size distribution of E. coli lineage data collected under various growth conditions. Elsevier 2021-02-24 /pmc/articles/PMC7961097/ /pubmed/33748708 http://dx.doi.org/10.1016/j.isci.2021.102220 Text en © 2021 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Jia, Chen
Singh, Abhyudai
Grima, Ramon
Cell size distribution of lineage data: analytic results and parameter inference
title Cell size distribution of lineage data: analytic results and parameter inference
title_full Cell size distribution of lineage data: analytic results and parameter inference
title_fullStr Cell size distribution of lineage data: analytic results and parameter inference
title_full_unstemmed Cell size distribution of lineage data: analytic results and parameter inference
title_short Cell size distribution of lineage data: analytic results and parameter inference
title_sort cell size distribution of lineage data: analytic results and parameter inference
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7961097/
https://www.ncbi.nlm.nih.gov/pubmed/33748708
http://dx.doi.org/10.1016/j.isci.2021.102220
work_keys_str_mv AT jiachen cellsizedistributionoflineagedataanalyticresultsandparameterinference
AT singhabhyudai cellsizedistributionoflineagedataanalyticresultsandparameterinference
AT grimaramon cellsizedistributionoflineagedataanalyticresultsandparameterinference