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Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma
BACKGROUND: Hepatocellular carcinoma (HCC) is a common malignant tumor with a poor prognosis. We aimed to identify a new prognostic model of HCC based on differentially expressed (DE) immune genes. METHODS: The DE immune genes were identified based on an analysis of 374 cases of HCC and 50 adjacent...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7962305/ https://www.ncbi.nlm.nih.gov/pubmed/33726698 http://dx.doi.org/10.1186/s12885-021-08012-2 |
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author | Chen, Haitao Li, Yueying Xiao, Shu-Yuan Guo, Jianchun |
author_facet | Chen, Haitao Li, Yueying Xiao, Shu-Yuan Guo, Jianchun |
author_sort | Chen, Haitao |
collection | PubMed |
description | BACKGROUND: Hepatocellular carcinoma (HCC) is a common malignant tumor with a poor prognosis. We aimed to identify a new prognostic model of HCC based on differentially expressed (DE) immune genes. METHODS: The DE immune genes were identified based on an analysis of 374 cases of HCC and 50 adjacent non-tumor specimens from the Cancer Genome Atlas (TCGA) database. Univariate Cox analysis, Lasso regression, and multivariate Cox analysis were used to construct the model based on the training group. Survival analysis and the receiver operating characteristic (ROC) curves were used to evaluate model performance. The testing group and the entire group were subsequently used for validation of the model. RESULTS: A five-immune gene model consisted of HSPA4, ISG20L2, NDRG1, EGF, and IL17D was identified. Based on the model, the overall survival was significantly different between the high-risk and low-risk groups (P = 7.953e-06). The AUCs for the model at 1- and 3-year were 0.849 and 0.74, respectively. The reliability of the model was confirmed using the validation groups. The risk score was identified as an independent prognostic parameter and closely related to the content of immune cells from human HCC specimens. CONCLUSION: We identified a five-immune gene model that can be used as an independent prognostic marker for HCC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-021-08012-2. |
format | Online Article Text |
id | pubmed-7962305 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-79623052021-03-16 Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma Chen, Haitao Li, Yueying Xiao, Shu-Yuan Guo, Jianchun BMC Cancer Research Article BACKGROUND: Hepatocellular carcinoma (HCC) is a common malignant tumor with a poor prognosis. We aimed to identify a new prognostic model of HCC based on differentially expressed (DE) immune genes. METHODS: The DE immune genes were identified based on an analysis of 374 cases of HCC and 50 adjacent non-tumor specimens from the Cancer Genome Atlas (TCGA) database. Univariate Cox analysis, Lasso regression, and multivariate Cox analysis were used to construct the model based on the training group. Survival analysis and the receiver operating characteristic (ROC) curves were used to evaluate model performance. The testing group and the entire group were subsequently used for validation of the model. RESULTS: A five-immune gene model consisted of HSPA4, ISG20L2, NDRG1, EGF, and IL17D was identified. Based on the model, the overall survival was significantly different between the high-risk and low-risk groups (P = 7.953e-06). The AUCs for the model at 1- and 3-year were 0.849 and 0.74, respectively. The reliability of the model was confirmed using the validation groups. The risk score was identified as an independent prognostic parameter and closely related to the content of immune cells from human HCC specimens. CONCLUSION: We identified a five-immune gene model that can be used as an independent prognostic marker for HCC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-021-08012-2. BioMed Central 2021-03-16 /pmc/articles/PMC7962305/ /pubmed/33726698 http://dx.doi.org/10.1186/s12885-021-08012-2 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Chen, Haitao Li, Yueying Xiao, Shu-Yuan Guo, Jianchun Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma |
title | Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma |
title_full | Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma |
title_fullStr | Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma |
title_full_unstemmed | Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma |
title_short | Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma |
title_sort | identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7962305/ https://www.ncbi.nlm.nih.gov/pubmed/33726698 http://dx.doi.org/10.1186/s12885-021-08012-2 |
work_keys_str_mv | AT chenhaitao identificationofafiveimmunegenemodelasanindependentprognosticfactorinhepatocellularcarcinoma AT liyueying identificationofafiveimmunegenemodelasanindependentprognosticfactorinhepatocellularcarcinoma AT xiaoshuyuan identificationofafiveimmunegenemodelasanindependentprognosticfactorinhepatocellularcarcinoma AT guojianchun identificationofafiveimmunegenemodelasanindependentprognosticfactorinhepatocellularcarcinoma |