Cargando…
NOTCH1: Review of its role in lymphatic development and study of seven families with rare pathogenic variants
BACKGROUND: We developed a Next‐Generation‐Sequencing (NGS) protocol to screen the most frequent genetic variants related to lymphedema and a group of candidate genes. The aim of the study was to find the genetic cause of lymphedema in the analyzed patients. METHODS: We sequenced a cohort of 246 Ita...
Autores principales: | , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7963424/ https://www.ncbi.nlm.nih.gov/pubmed/33247628 http://dx.doi.org/10.1002/mgg3.1529 |
_version_ | 1783665599742738432 |
---|---|
author | Michelini, Sandro Ricci, Maurizio Serrani, Roberta Barati, Shila Kenanoglu, Sercan Veselenyiova, Dominika Kurti, Danjela Baglivo, Mirko Basha, Syed Hussain Priya, Sasi Dautaj, Astrit Dundar, Munis Krajcovic, Juraj Bertelli, Matteo |
author_facet | Michelini, Sandro Ricci, Maurizio Serrani, Roberta Barati, Shila Kenanoglu, Sercan Veselenyiova, Dominika Kurti, Danjela Baglivo, Mirko Basha, Syed Hussain Priya, Sasi Dautaj, Astrit Dundar, Munis Krajcovic, Juraj Bertelli, Matteo |
author_sort | Michelini, Sandro |
collection | PubMed |
description | BACKGROUND: We developed a Next‐Generation‐Sequencing (NGS) protocol to screen the most frequent genetic variants related to lymphedema and a group of candidate genes. The aim of the study was to find the genetic cause of lymphedema in the analyzed patients. METHODS: We sequenced a cohort of 246 Italian patients with lymphatic malformations. In the first step, we analyzed genes known to be linked to lymphedema: 235 out of 246 patients tested negative for the most frequent variants and underwent testing for variants in a group of candidate genes, including the NOTCH1 gene, selected from the database of mouse models. We also performed in silico analysis to observe molecular interactions between the wild‐type and the variant amino acids and other protein residues. RESULTS: Seven out of 235 probands, five with sporadic and two with familial lymphedema, were found to carry rare missense variants in the NOTCH1 gene. CONCLUSIONS: Our results propose that NOTCH1 could be a novel candidate for genetic predisposition to lymphedema. |
format | Online Article Text |
id | pubmed-7963424 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79634242021-03-19 NOTCH1: Review of its role in lymphatic development and study of seven families with rare pathogenic variants Michelini, Sandro Ricci, Maurizio Serrani, Roberta Barati, Shila Kenanoglu, Sercan Veselenyiova, Dominika Kurti, Danjela Baglivo, Mirko Basha, Syed Hussain Priya, Sasi Dautaj, Astrit Dundar, Munis Krajcovic, Juraj Bertelli, Matteo Mol Genet Genomic Med Original Articles BACKGROUND: We developed a Next‐Generation‐Sequencing (NGS) protocol to screen the most frequent genetic variants related to lymphedema and a group of candidate genes. The aim of the study was to find the genetic cause of lymphedema in the analyzed patients. METHODS: We sequenced a cohort of 246 Italian patients with lymphatic malformations. In the first step, we analyzed genes known to be linked to lymphedema: 235 out of 246 patients tested negative for the most frequent variants and underwent testing for variants in a group of candidate genes, including the NOTCH1 gene, selected from the database of mouse models. We also performed in silico analysis to observe molecular interactions between the wild‐type and the variant amino acids and other protein residues. RESULTS: Seven out of 235 probands, five with sporadic and two with familial lymphedema, were found to carry rare missense variants in the NOTCH1 gene. CONCLUSIONS: Our results propose that NOTCH1 could be a novel candidate for genetic predisposition to lymphedema. John Wiley and Sons Inc. 2020-11-28 /pmc/articles/PMC7963424/ /pubmed/33247628 http://dx.doi.org/10.1002/mgg3.1529 Text en © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Michelini, Sandro Ricci, Maurizio Serrani, Roberta Barati, Shila Kenanoglu, Sercan Veselenyiova, Dominika Kurti, Danjela Baglivo, Mirko Basha, Syed Hussain Priya, Sasi Dautaj, Astrit Dundar, Munis Krajcovic, Juraj Bertelli, Matteo NOTCH1: Review of its role in lymphatic development and study of seven families with rare pathogenic variants |
title |
NOTCH1: Review of its role in lymphatic development and study of seven families with rare pathogenic variants |
title_full |
NOTCH1: Review of its role in lymphatic development and study of seven families with rare pathogenic variants |
title_fullStr |
NOTCH1: Review of its role in lymphatic development and study of seven families with rare pathogenic variants |
title_full_unstemmed |
NOTCH1: Review of its role in lymphatic development and study of seven families with rare pathogenic variants |
title_short |
NOTCH1: Review of its role in lymphatic development and study of seven families with rare pathogenic variants |
title_sort | notch1: review of its role in lymphatic development and study of seven families with rare pathogenic variants |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7963424/ https://www.ncbi.nlm.nih.gov/pubmed/33247628 http://dx.doi.org/10.1002/mgg3.1529 |
work_keys_str_mv | AT michelinisandro notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT riccimaurizio notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT serraniroberta notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT baratishila notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT kenanoglusercan notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT veselenyiovadominika notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT kurtidanjela notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT baglivomirko notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT bashasyedhussain notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT priyasasi notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT dautajastrit notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT dundarmunis notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT krajcovicjuraj notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants AT bertellimatteo notch1reviewofitsroleinlymphaticdevelopmentandstudyofsevenfamilieswithrarepathogenicvariants |