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Renormalization group theory of molecular dynamics

Large scale computation by molecular dynamics (MD) method is often challenging or even impractical due to its computational cost, in spite of its wide applications in a variety of fields. Although the recent advancement in parallel computing and introduction of coarse-graining methods have enabled l...

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Autores principales: Ichishima, Daiji, Matsumura, Yuya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7966406/
https://www.ncbi.nlm.nih.gov/pubmed/33727572
http://dx.doi.org/10.1038/s41598-021-85286-3
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author Ichishima, Daiji
Matsumura, Yuya
author_facet Ichishima, Daiji
Matsumura, Yuya
author_sort Ichishima, Daiji
collection PubMed
description Large scale computation by molecular dynamics (MD) method is often challenging or even impractical due to its computational cost, in spite of its wide applications in a variety of fields. Although the recent advancement in parallel computing and introduction of coarse-graining methods have enabled large scale calculations, macroscopic analyses are still not realizable. Here, we present renormalized molecular dynamics (RMD), a renormalization group of MD in thermal equilibrium derived by using the Migdal–Kadanoff approximation. The RMD method improves the computational efficiency drastically while retaining the advantage of MD. The computational efficiency is improved by a factor of [Formula: see text] over conventional MD where D is the spatial dimension and n is the number of applied renormalization transforms. We verify RMD by conducting two simulations; melting of an aluminum slab and collision of aluminum spheres. Both problems show that the expectation values of physical quantities are in good agreement after the renormalization, whereas the consumption time is reduced as expected. To observe behavior of RMD near the critical point, the critical exponent of the Lennard-Jones potential is extracted by calculating specific heat on the mesoscale. The critical exponent is obtained as [Formula: see text] . In addition, the renormalization group of dissipative particle dynamics (DPD) is derived. Renormalized DPD is equivalent to RMD in isothermal systems under the condition such that Deborah number [Formula: see text] .
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spelling pubmed-79664062021-03-19 Renormalization group theory of molecular dynamics Ichishima, Daiji Matsumura, Yuya Sci Rep Article Large scale computation by molecular dynamics (MD) method is often challenging or even impractical due to its computational cost, in spite of its wide applications in a variety of fields. Although the recent advancement in parallel computing and introduction of coarse-graining methods have enabled large scale calculations, macroscopic analyses are still not realizable. Here, we present renormalized molecular dynamics (RMD), a renormalization group of MD in thermal equilibrium derived by using the Migdal–Kadanoff approximation. The RMD method improves the computational efficiency drastically while retaining the advantage of MD. The computational efficiency is improved by a factor of [Formula: see text] over conventional MD where D is the spatial dimension and n is the number of applied renormalization transforms. We verify RMD by conducting two simulations; melting of an aluminum slab and collision of aluminum spheres. Both problems show that the expectation values of physical quantities are in good agreement after the renormalization, whereas the consumption time is reduced as expected. To observe behavior of RMD near the critical point, the critical exponent of the Lennard-Jones potential is extracted by calculating specific heat on the mesoscale. The critical exponent is obtained as [Formula: see text] . In addition, the renormalization group of dissipative particle dynamics (DPD) is derived. Renormalized DPD is equivalent to RMD in isothermal systems under the condition such that Deborah number [Formula: see text] . Nature Publishing Group UK 2021-03-16 /pmc/articles/PMC7966406/ /pubmed/33727572 http://dx.doi.org/10.1038/s41598-021-85286-3 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ichishima, Daiji
Matsumura, Yuya
Renormalization group theory of molecular dynamics
title Renormalization group theory of molecular dynamics
title_full Renormalization group theory of molecular dynamics
title_fullStr Renormalization group theory of molecular dynamics
title_full_unstemmed Renormalization group theory of molecular dynamics
title_short Renormalization group theory of molecular dynamics
title_sort renormalization group theory of molecular dynamics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7966406/
https://www.ncbi.nlm.nih.gov/pubmed/33727572
http://dx.doi.org/10.1038/s41598-021-85286-3
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