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Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales

Despite the importance of microbial communities in ecosystem functions, the mechanisms underlying the assembly of rare taxa over time are poorly understood. It remains largely unknown whether rare taxa exhibit similar assembly processes to common taxa in local communities. We herein retrieved the 16...

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Autores principales: Lee, Sang-Hoon, Kim, Taek-Seung, Park, Hee-Deung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7966942/
https://www.ncbi.nlm.nih.gov/pubmed/33563869
http://dx.doi.org/10.1264/jsme2.ME20110
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author Lee, Sang-Hoon
Kim, Taek-Seung
Park, Hee-Deung
author_facet Lee, Sang-Hoon
Kim, Taek-Seung
Park, Hee-Deung
author_sort Lee, Sang-Hoon
collection PubMed
description Despite the importance of microbial communities in ecosystem functions, the mechanisms underlying the assembly of rare taxa over time are poorly understood. It remains largely unknown whether rare taxa exhibit similar assembly processes to common taxa in local communities. We herein retrieved the 16S rRNA sequences of bacteria collected bimonthly for 2 years from the Pohang wastewater treatment plant. The transient-rare taxa showed different abundance distributions from the common taxa. Transient-rare taxon assemblages also exhibited higher temporal variations than common taxon assemblages, suggesting the distinct ecological patterns of the two assemblages. A multivariate analysis revealed that environmental parameters accounted for 25.3 and 61.6% of temporal variations in the transient-rare and common taxon assemblages, respectively. The fitting of all observed taxa to a neutral community model revealed that 96.4% of the transient-rare taxa (relative abundance, 71.4%) and 73.3% of the common taxa (relative abundance, 45.6%) followed the model, suggesting that stochastic mechanisms were more important than deterministic ones in the assembly of the transient-rare taxa. Collectively, the present results indicate that the transient-rare bacterial taxa at the Pohang wastewater treatment plant differed from the common taxa in ecological patterns, suggesting that dispersal is a key process in their assembly.
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spelling pubmed-79669422021-03-26 Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales Lee, Sang-Hoon Kim, Taek-Seung Park, Hee-Deung Microbes Environ Regular Paper Despite the importance of microbial communities in ecosystem functions, the mechanisms underlying the assembly of rare taxa over time are poorly understood. It remains largely unknown whether rare taxa exhibit similar assembly processes to common taxa in local communities. We herein retrieved the 16S rRNA sequences of bacteria collected bimonthly for 2 years from the Pohang wastewater treatment plant. The transient-rare taxa showed different abundance distributions from the common taxa. Transient-rare taxon assemblages also exhibited higher temporal variations than common taxon assemblages, suggesting the distinct ecological patterns of the two assemblages. A multivariate analysis revealed that environmental parameters accounted for 25.3 and 61.6% of temporal variations in the transient-rare and common taxon assemblages, respectively. The fitting of all observed taxa to a neutral community model revealed that 96.4% of the transient-rare taxa (relative abundance, 71.4%) and 73.3% of the common taxa (relative abundance, 45.6%) followed the model, suggesting that stochastic mechanisms were more important than deterministic ones in the assembly of the transient-rare taxa. Collectively, the present results indicate that the transient-rare bacterial taxa at the Pohang wastewater treatment plant differed from the common taxa in ecological patterns, suggesting that dispersal is a key process in their assembly. Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles 2021 2021-02-10 /pmc/articles/PMC7966942/ /pubmed/33563869 http://dx.doi.org/10.1264/jsme2.ME20110 Text en 2021 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles. http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Regular Paper
Lee, Sang-Hoon
Kim, Taek-Seung
Park, Hee-Deung
Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales
title Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales
title_full Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales
title_fullStr Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales
title_full_unstemmed Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales
title_short Transient-rare Bacterial Taxa Are Assembled Neutrally across Temporal Scales
title_sort transient-rare bacterial taxa are assembled neutrally across temporal scales
topic Regular Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7966942/
https://www.ncbi.nlm.nih.gov/pubmed/33563869
http://dx.doi.org/10.1264/jsme2.ME20110
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