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Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis
Moricandia is a genus belonging to the family Brassicaceae. C(3) and C(3—)C(4) photosynthesis Moricandia species exist in a close phylogenetic proximity, as well as to Brassica crops. Here, we performed PacBio genome sequencing on M. moricandioides and M. arvensis. The genomes were assembled using F...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7966999/ https://www.ncbi.nlm.nih.gov/pubmed/33748364 http://dx.doi.org/10.1016/j.dib.2021.106922 |
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author | Lin, Meng-Ying Koppers, Nils Denton, Alisandra Schlüter, Urte Weber, Andreas P.M. |
author_facet | Lin, Meng-Ying Koppers, Nils Denton, Alisandra Schlüter, Urte Weber, Andreas P.M. |
author_sort | Lin, Meng-Ying |
collection | PubMed |
description | Moricandia is a genus belonging to the family Brassicaceae. C(3) and C(3—)C(4) photosynthesis Moricandia species exist in a close phylogenetic proximity, as well as to Brassica crops. Here, we performed PacBio genome sequencing on M. moricandioides and M. arvensis. The genomes were assembled using Flye assembler, then polished with Illumina reads and reduced duplication with Purge Haplotigs. The total length of genome assemblies of M. moricandioides and M. arvensis was 498 Mbp and 759 Mbp, respectively. These data will be useful for studies of the genetic control of C(3—)C(4) characteristics, therefore gaining new insights into the early evolutionary steps of C(4) photosynthesis. Further, it can be integrated into Brassica crop breeding. The data can be accessed at ENA under the project number PRJEB39764. |
format | Online Article Text |
id | pubmed-7966999 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-79669992021-03-19 Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis Lin, Meng-Ying Koppers, Nils Denton, Alisandra Schlüter, Urte Weber, Andreas P.M. Data Brief Data Article Moricandia is a genus belonging to the family Brassicaceae. C(3) and C(3—)C(4) photosynthesis Moricandia species exist in a close phylogenetic proximity, as well as to Brassica crops. Here, we performed PacBio genome sequencing on M. moricandioides and M. arvensis. The genomes were assembled using Flye assembler, then polished with Illumina reads and reduced duplication with Purge Haplotigs. The total length of genome assemblies of M. moricandioides and M. arvensis was 498 Mbp and 759 Mbp, respectively. These data will be useful for studies of the genetic control of C(3—)C(4) characteristics, therefore gaining new insights into the early evolutionary steps of C(4) photosynthesis. Further, it can be integrated into Brassica crop breeding. The data can be accessed at ENA under the project number PRJEB39764. Elsevier 2021-03-01 /pmc/articles/PMC7966999/ /pubmed/33748364 http://dx.doi.org/10.1016/j.dib.2021.106922 Text en © 2021 The Author(s). Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data Article Lin, Meng-Ying Koppers, Nils Denton, Alisandra Schlüter, Urte Weber, Andreas P.M. Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis |
title | Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis |
title_full | Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis |
title_fullStr | Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis |
title_full_unstemmed | Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis |
title_short | Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis |
title_sort | whole genome sequencing and assembly data of moricandia moricandioides and m. arvensis |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7966999/ https://www.ncbi.nlm.nih.gov/pubmed/33748364 http://dx.doi.org/10.1016/j.dib.2021.106922 |
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