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Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis

Moricandia is a genus belonging to the family Brassicaceae. C(3) and C(3—)C(4) photosynthesis Moricandia species exist in a close phylogenetic proximity, as well as to Brassica crops. Here, we performed PacBio genome sequencing on M. moricandioides and M. arvensis. The genomes were assembled using F...

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Autores principales: Lin, Meng-Ying, Koppers, Nils, Denton, Alisandra, Schlüter, Urte, Weber, Andreas P.M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7966999/
https://www.ncbi.nlm.nih.gov/pubmed/33748364
http://dx.doi.org/10.1016/j.dib.2021.106922
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author Lin, Meng-Ying
Koppers, Nils
Denton, Alisandra
Schlüter, Urte
Weber, Andreas P.M.
author_facet Lin, Meng-Ying
Koppers, Nils
Denton, Alisandra
Schlüter, Urte
Weber, Andreas P.M.
author_sort Lin, Meng-Ying
collection PubMed
description Moricandia is a genus belonging to the family Brassicaceae. C(3) and C(3—)C(4) photosynthesis Moricandia species exist in a close phylogenetic proximity, as well as to Brassica crops. Here, we performed PacBio genome sequencing on M. moricandioides and M. arvensis. The genomes were assembled using Flye assembler, then polished with Illumina reads and reduced duplication with Purge Haplotigs. The total length of genome assemblies of M. moricandioides and M. arvensis was 498 Mbp and 759 Mbp, respectively. These data will be useful for studies of the genetic control of C(3—)C(4) characteristics, therefore gaining new insights into the early evolutionary steps of C(4) photosynthesis. Further, it can be integrated into Brassica crop breeding. The data can be accessed at ENA under the project number PRJEB39764.
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spelling pubmed-79669992021-03-19 Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis Lin, Meng-Ying Koppers, Nils Denton, Alisandra Schlüter, Urte Weber, Andreas P.M. Data Brief Data Article Moricandia is a genus belonging to the family Brassicaceae. C(3) and C(3—)C(4) photosynthesis Moricandia species exist in a close phylogenetic proximity, as well as to Brassica crops. Here, we performed PacBio genome sequencing on M. moricandioides and M. arvensis. The genomes were assembled using Flye assembler, then polished with Illumina reads and reduced duplication with Purge Haplotigs. The total length of genome assemblies of M. moricandioides and M. arvensis was 498 Mbp and 759 Mbp, respectively. These data will be useful for studies of the genetic control of C(3—)C(4) characteristics, therefore gaining new insights into the early evolutionary steps of C(4) photosynthesis. Further, it can be integrated into Brassica crop breeding. The data can be accessed at ENA under the project number PRJEB39764. Elsevier 2021-03-01 /pmc/articles/PMC7966999/ /pubmed/33748364 http://dx.doi.org/10.1016/j.dib.2021.106922 Text en © 2021 The Author(s). Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Lin, Meng-Ying
Koppers, Nils
Denton, Alisandra
Schlüter, Urte
Weber, Andreas P.M.
Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis
title Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis
title_full Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis
title_fullStr Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis
title_full_unstemmed Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis
title_short Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis
title_sort whole genome sequencing and assembly data of moricandia moricandioides and m. arvensis
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7966999/
https://www.ncbi.nlm.nih.gov/pubmed/33748364
http://dx.doi.org/10.1016/j.dib.2021.106922
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