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A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma

The 5-year survival of hepatocellular carcinoma (HCC) is difficult due to the high recurrence rate and metastasis. Tumor infiltrating immune cells (TICs) and immune-related genes (IRGs) bring hope to improve survival and treatment of HCC patients. However, there are problems in predicting immune sig...

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Detalles Bibliográficos
Autores principales: Ding, Huan, Hu, Huan, Tian, Feifei, Liang, Huaping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7969702/
https://www.ncbi.nlm.nih.gov/pubmed/33656546
http://dx.doi.org/10.1042/BSR20204219
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author Ding, Huan
Hu, Huan
Tian, Feifei
Liang, Huaping
author_facet Ding, Huan
Hu, Huan
Tian, Feifei
Liang, Huaping
author_sort Ding, Huan
collection PubMed
description The 5-year survival of hepatocellular carcinoma (HCC) is difficult due to the high recurrence rate and metastasis. Tumor infiltrating immune cells (TICs) and immune-related genes (IRGs) bring hope to improve survival and treatment of HCC patients. However, there are problems in predicting immune signatures and identifying novel therapeutic targets. In the study, the CIBERSORT algorithm was used to evaluate 22 immune cell infiltration patterns in gene expression omnibus (GEO) and the cancer genome atlas (TCGA) data. Eight immune cells were found to have significant infiltration differences between the tumor and normal groups. The CD8+ T cells immune signature was constructed by least absolute shrinkage and selection operator (LASSO) algorithm. The high infiltration level of CD8+ T cells could significantly improve survival of patients. The weighted gene co-expression network analysis (WGCNA) algorithm identified MMP9 was closely related to the overall survival of HCC patients. K-M survival and tROC analysis confirmed that MMP9 had an excellent prognostic prediction. Cox regression showed that a dual immune signature of CD8+ T cells and MMP9 was independent survival factor in HCC. Therefore, a dual prognostic immune signature could improve the survival of patient and may provide a new strategy for the immunotherapy of HCC.
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spelling pubmed-79697022021-03-31 A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma Ding, Huan Hu, Huan Tian, Feifei Liang, Huaping Biosci Rep Bioinformatics The 5-year survival of hepatocellular carcinoma (HCC) is difficult due to the high recurrence rate and metastasis. Tumor infiltrating immune cells (TICs) and immune-related genes (IRGs) bring hope to improve survival and treatment of HCC patients. However, there are problems in predicting immune signatures and identifying novel therapeutic targets. In the study, the CIBERSORT algorithm was used to evaluate 22 immune cell infiltration patterns in gene expression omnibus (GEO) and the cancer genome atlas (TCGA) data. Eight immune cells were found to have significant infiltration differences between the tumor and normal groups. The CD8+ T cells immune signature was constructed by least absolute shrinkage and selection operator (LASSO) algorithm. The high infiltration level of CD8+ T cells could significantly improve survival of patients. The weighted gene co-expression network analysis (WGCNA) algorithm identified MMP9 was closely related to the overall survival of HCC patients. K-M survival and tROC analysis confirmed that MMP9 had an excellent prognostic prediction. Cox regression showed that a dual immune signature of CD8+ T cells and MMP9 was independent survival factor in HCC. Therefore, a dual prognostic immune signature could improve the survival of patient and may provide a new strategy for the immunotherapy of HCC. Portland Press Ltd. 2021-03-17 /pmc/articles/PMC7969702/ /pubmed/33656546 http://dx.doi.org/10.1042/BSR20204219 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Bioinformatics
Ding, Huan
Hu, Huan
Tian, Feifei
Liang, Huaping
A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
title A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
title_full A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
title_fullStr A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
title_full_unstemmed A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
title_short A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
title_sort dual immune signature of cd8+ t cells and mmp9 improves the survival of patients with hepatocellular carcinoma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7969702/
https://www.ncbi.nlm.nih.gov/pubmed/33656546
http://dx.doi.org/10.1042/BSR20204219
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