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A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma
The 5-year survival of hepatocellular carcinoma (HCC) is difficult due to the high recurrence rate and metastasis. Tumor infiltrating immune cells (TICs) and immune-related genes (IRGs) bring hope to improve survival and treatment of HCC patients. However, there are problems in predicting immune sig...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Portland Press Ltd.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7969702/ https://www.ncbi.nlm.nih.gov/pubmed/33656546 http://dx.doi.org/10.1042/BSR20204219 |
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author | Ding, Huan Hu, Huan Tian, Feifei Liang, Huaping |
author_facet | Ding, Huan Hu, Huan Tian, Feifei Liang, Huaping |
author_sort | Ding, Huan |
collection | PubMed |
description | The 5-year survival of hepatocellular carcinoma (HCC) is difficult due to the high recurrence rate and metastasis. Tumor infiltrating immune cells (TICs) and immune-related genes (IRGs) bring hope to improve survival and treatment of HCC patients. However, there are problems in predicting immune signatures and identifying novel therapeutic targets. In the study, the CIBERSORT algorithm was used to evaluate 22 immune cell infiltration patterns in gene expression omnibus (GEO) and the cancer genome atlas (TCGA) data. Eight immune cells were found to have significant infiltration differences between the tumor and normal groups. The CD8+ T cells immune signature was constructed by least absolute shrinkage and selection operator (LASSO) algorithm. The high infiltration level of CD8+ T cells could significantly improve survival of patients. The weighted gene co-expression network analysis (WGCNA) algorithm identified MMP9 was closely related to the overall survival of HCC patients. K-M survival and tROC analysis confirmed that MMP9 had an excellent prognostic prediction. Cox regression showed that a dual immune signature of CD8+ T cells and MMP9 was independent survival factor in HCC. Therefore, a dual prognostic immune signature could improve the survival of patient and may provide a new strategy for the immunotherapy of HCC. |
format | Online Article Text |
id | pubmed-7969702 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Portland Press Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79697022021-03-31 A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma Ding, Huan Hu, Huan Tian, Feifei Liang, Huaping Biosci Rep Bioinformatics The 5-year survival of hepatocellular carcinoma (HCC) is difficult due to the high recurrence rate and metastasis. Tumor infiltrating immune cells (TICs) and immune-related genes (IRGs) bring hope to improve survival and treatment of HCC patients. However, there are problems in predicting immune signatures and identifying novel therapeutic targets. In the study, the CIBERSORT algorithm was used to evaluate 22 immune cell infiltration patterns in gene expression omnibus (GEO) and the cancer genome atlas (TCGA) data. Eight immune cells were found to have significant infiltration differences between the tumor and normal groups. The CD8+ T cells immune signature was constructed by least absolute shrinkage and selection operator (LASSO) algorithm. The high infiltration level of CD8+ T cells could significantly improve survival of patients. The weighted gene co-expression network analysis (WGCNA) algorithm identified MMP9 was closely related to the overall survival of HCC patients. K-M survival and tROC analysis confirmed that MMP9 had an excellent prognostic prediction. Cox regression showed that a dual immune signature of CD8+ T cells and MMP9 was independent survival factor in HCC. Therefore, a dual prognostic immune signature could improve the survival of patient and may provide a new strategy for the immunotherapy of HCC. Portland Press Ltd. 2021-03-17 /pmc/articles/PMC7969702/ /pubmed/33656546 http://dx.doi.org/10.1042/BSR20204219 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Bioinformatics Ding, Huan Hu, Huan Tian, Feifei Liang, Huaping A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma |
title | A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma |
title_full | A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma |
title_fullStr | A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma |
title_full_unstemmed | A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma |
title_short | A dual immune signature of CD8+ T cells and MMP9 improves the survival of patients with hepatocellular carcinoma |
title_sort | dual immune signature of cd8+ t cells and mmp9 improves the survival of patients with hepatocellular carcinoma |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7969702/ https://www.ncbi.nlm.nih.gov/pubmed/33656546 http://dx.doi.org/10.1042/BSR20204219 |
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