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The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species
BACKGROUND: Progress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information. FINDINGS: The GenTree Platform contains phenotypic and env...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2021
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7970660/ https://www.ncbi.nlm.nih.gov/pubmed/33734368 http://dx.doi.org/10.1093/gigascience/giab010 |
| _version_ | 1783666456293015552 |
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| author | Opgenoorth, Lars Dauphin, Benjamin Benavides, Raquel Heer, Katrin Alizoti, Paraskevi Martínez-Sancho, Elisabet Alía, Ricardo Ambrosio, Olivier Audrey, Albet Auñón, Francisco Avanzi, Camilla Avramidou, Evangelia Bagnoli, Francesca Barbas, Evangelos Bastias, Cristina C Bastien, Catherine Ballesteros, Eduardo Beffa, Giorgia Bernier, Frédéric Bignalet, Henri Bodineau, Guillaume Bouic, Damien Brodbeck, Sabine Brunetto, William Buchovska, Jurata Buy, Melanie Cabanillas-Saldaña, Ana M Carvalho, Bárbara Cheval, Nicolas Climent, José M Correard, Marianne Cremer, Eva Danusevičius, Darius Del Caño, Fernando Denou, Jean-Luc di Gerardi, Nicolas Dokhelar, Bernard Ducousso, Alexis Eskild Nilsen, Anne Farsakoglou, Anna-Maria Fonti, Patrick Ganopoulos, Ioannis García del Barrio, José M Gilg, Olivier González-Martínez, Santiago C Graf, René Gray, Alan Grivet, Delphine Gugerli, Felix Hartleitner, Christoph Hollenbach, Enja Hurel, Agathe Issehut, Bernard Jean, Florence Jorge, Veronique Jouineau, Arnaud Kappner, Jan-Philipp Kärkkäinen, Katri Kesälahti, Robert Knutzen, Florian Kujala, Sonja T Kumpula, Timo A Labriola, Mariaceleste Lalanne, Celine Lambertz, Johannes Lascoux, Martin Lejeune, Vincent Le-Provost, Gregoire Levillain, Joseph Liesebach, Mirko López-Quiroga, David Meier, Benjamin Malliarou, Ermioni Marchon, Jérémy Mariotte, Nicolas Mas, Antonio Matesanz, Silvia Meischner, Helge Michotey, Célia Milesi, Pascal Morganti, Sandro Nievergelt, Daniel Notivol, Eduardo Ostreng, Geir Pakull, Birte Perry, Annika Piotti, Andrea Plomion, Christophe Poinot, Nicolas Pringarbe, Mehdi Puzos, Luc Pyhäjärvi, Tanja Raffin, Annie Ramírez-Valiente, José A Rellstab, Christian Remi, Dourthe Richter, Sebastian Robledo-Arnuncio, Juan J San Segundo, Sergio Savolainen, Outi Schueler, Silvio Schneck, Volker Scotti, Ivan Semerikov, Vladimir Slámová, Lenka Sønstebø, Jørn Henrik Spanu, Ilaria Thevenet, Jean Tollefsrud, Mari Mette Turion, Norbert Vendramin, Giovanni Giuseppe Villar, Marc von Arx, Georg Westin, Johan Fady, Bruno Myking, Tor Valladares, Fernando Aravanopoulos, Filippos A Cavers, Stephen |
| author_facet | Opgenoorth, Lars Dauphin, Benjamin Benavides, Raquel Heer, Katrin Alizoti, Paraskevi Martínez-Sancho, Elisabet Alía, Ricardo Ambrosio, Olivier Audrey, Albet Auñón, Francisco Avanzi, Camilla Avramidou, Evangelia Bagnoli, Francesca Barbas, Evangelos Bastias, Cristina C Bastien, Catherine Ballesteros, Eduardo Beffa, Giorgia Bernier, Frédéric Bignalet, Henri Bodineau, Guillaume Bouic, Damien Brodbeck, Sabine Brunetto, William Buchovska, Jurata Buy, Melanie Cabanillas-Saldaña, Ana M Carvalho, Bárbara Cheval, Nicolas Climent, José M Correard, Marianne Cremer, Eva Danusevičius, Darius Del Caño, Fernando Denou, Jean-Luc di Gerardi, Nicolas Dokhelar, Bernard Ducousso, Alexis Eskild Nilsen, Anne Farsakoglou, Anna-Maria Fonti, Patrick Ganopoulos, Ioannis García del Barrio, José M Gilg, Olivier González-Martínez, Santiago C Graf, René Gray, Alan Grivet, Delphine Gugerli, Felix Hartleitner, Christoph Hollenbach, Enja Hurel, Agathe Issehut, Bernard Jean, Florence Jorge, Veronique Jouineau, Arnaud Kappner, Jan-Philipp Kärkkäinen, Katri Kesälahti, Robert Knutzen, Florian Kujala, Sonja T Kumpula, Timo A Labriola, Mariaceleste Lalanne, Celine Lambertz, Johannes Lascoux, Martin Lejeune, Vincent Le-Provost, Gregoire Levillain, Joseph Liesebach, Mirko López-Quiroga, David Meier, Benjamin Malliarou, Ermioni Marchon, Jérémy Mariotte, Nicolas Mas, Antonio Matesanz, Silvia Meischner, Helge Michotey, Célia Milesi, Pascal Morganti, Sandro Nievergelt, Daniel Notivol, Eduardo Ostreng, Geir Pakull, Birte Perry, Annika Piotti, Andrea Plomion, Christophe Poinot, Nicolas Pringarbe, Mehdi Puzos, Luc Pyhäjärvi, Tanja Raffin, Annie Ramírez-Valiente, José A Rellstab, Christian Remi, Dourthe Richter, Sebastian Robledo-Arnuncio, Juan J San Segundo, Sergio Savolainen, Outi Schueler, Silvio Schneck, Volker Scotti, Ivan Semerikov, Vladimir Slámová, Lenka Sønstebø, Jørn Henrik Spanu, Ilaria Thevenet, Jean Tollefsrud, Mari Mette Turion, Norbert Vendramin, Giovanni Giuseppe Villar, Marc von Arx, Georg Westin, Johan Fady, Bruno Myking, Tor Valladares, Fernando Aravanopoulos, Filippos A Cavers, Stephen |
| author_sort | Opgenoorth, Lars |
| collection | PubMed |
| description | BACKGROUND: Progress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information. FINDINGS: The GenTree Platform contains phenotypic and environmental data from 4,959 trees from 12 ecologically and economically important European forest tree species: Abies alba Mill. (silver fir), Betula pendula Roth. (silver birch), Fagus sylvatica L. (European beech), Picea abies (L.) H. Karst (Norway spruce), Pinus cembra L. (Swiss stone pine), Pinus halepensis Mill. (Aleppo pine), Pinus nigra Arnold (European black pine), Pinus pinaster Aiton (maritime pine), Pinus sylvestris L. (Scots pine), Populus nigra L. (European black poplar), Taxus baccata L. (English yew), and Quercus petraea (Matt.) Liebl. (sessile oak). Phenotypic (height, diameter at breast height, crown size, bark thickness, biomass, straightness, forking, branch angle, fructification), regeneration, environmental in situ measurements (soil depth, vegetation cover, competition indices), and environmental modeling data extracted by using bilinear interpolation accounting for surrounding conditions of each tree (precipitation, temperature, insolation, drought indices) were obtained from trees in 194 sites covering the species’ geographic ranges and reflecting local environmental gradients. CONCLUSION: The GenTree Platform is a new resource for investigating ecological and evolutionary processes in forest trees. The coherent phenotyping and environmental characterization across 12 species in their European ranges allow for a wide range of analyses from forest ecologists, conservationists, and macro-ecologists. Also, the data here presented can be linked to the GenTree Dendroecological collection, the GenTree Leaf Trait collection, and the GenTree Genomic collection presented elsewhere, which together build the largest evolutionary forest ecology data collection available. |
| format | Online Article Text |
| id | pubmed-7970660 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2021 |
| publisher | Oxford University Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-79706602021-03-23 The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species Opgenoorth, Lars Dauphin, Benjamin Benavides, Raquel Heer, Katrin Alizoti, Paraskevi Martínez-Sancho, Elisabet Alía, Ricardo Ambrosio, Olivier Audrey, Albet Auñón, Francisco Avanzi, Camilla Avramidou, Evangelia Bagnoli, Francesca Barbas, Evangelos Bastias, Cristina C Bastien, Catherine Ballesteros, Eduardo Beffa, Giorgia Bernier, Frédéric Bignalet, Henri Bodineau, Guillaume Bouic, Damien Brodbeck, Sabine Brunetto, William Buchovska, Jurata Buy, Melanie Cabanillas-Saldaña, Ana M Carvalho, Bárbara Cheval, Nicolas Climent, José M Correard, Marianne Cremer, Eva Danusevičius, Darius Del Caño, Fernando Denou, Jean-Luc di Gerardi, Nicolas Dokhelar, Bernard Ducousso, Alexis Eskild Nilsen, Anne Farsakoglou, Anna-Maria Fonti, Patrick Ganopoulos, Ioannis García del Barrio, José M Gilg, Olivier González-Martínez, Santiago C Graf, René Gray, Alan Grivet, Delphine Gugerli, Felix Hartleitner, Christoph Hollenbach, Enja Hurel, Agathe Issehut, Bernard Jean, Florence Jorge, Veronique Jouineau, Arnaud Kappner, Jan-Philipp Kärkkäinen, Katri Kesälahti, Robert Knutzen, Florian Kujala, Sonja T Kumpula, Timo A Labriola, Mariaceleste Lalanne, Celine Lambertz, Johannes Lascoux, Martin Lejeune, Vincent Le-Provost, Gregoire Levillain, Joseph Liesebach, Mirko López-Quiroga, David Meier, Benjamin Malliarou, Ermioni Marchon, Jérémy Mariotte, Nicolas Mas, Antonio Matesanz, Silvia Meischner, Helge Michotey, Célia Milesi, Pascal Morganti, Sandro Nievergelt, Daniel Notivol, Eduardo Ostreng, Geir Pakull, Birte Perry, Annika Piotti, Andrea Plomion, Christophe Poinot, Nicolas Pringarbe, Mehdi Puzos, Luc Pyhäjärvi, Tanja Raffin, Annie Ramírez-Valiente, José A Rellstab, Christian Remi, Dourthe Richter, Sebastian Robledo-Arnuncio, Juan J San Segundo, Sergio Savolainen, Outi Schueler, Silvio Schneck, Volker Scotti, Ivan Semerikov, Vladimir Slámová, Lenka Sønstebø, Jørn Henrik Spanu, Ilaria Thevenet, Jean Tollefsrud, Mari Mette Turion, Norbert Vendramin, Giovanni Giuseppe Villar, Marc von Arx, Georg Westin, Johan Fady, Bruno Myking, Tor Valladares, Fernando Aravanopoulos, Filippos A Cavers, Stephen Gigascience Data Note BACKGROUND: Progress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information. FINDINGS: The GenTree Platform contains phenotypic and environmental data from 4,959 trees from 12 ecologically and economically important European forest tree species: Abies alba Mill. (silver fir), Betula pendula Roth. (silver birch), Fagus sylvatica L. (European beech), Picea abies (L.) H. Karst (Norway spruce), Pinus cembra L. (Swiss stone pine), Pinus halepensis Mill. (Aleppo pine), Pinus nigra Arnold (European black pine), Pinus pinaster Aiton (maritime pine), Pinus sylvestris L. (Scots pine), Populus nigra L. (European black poplar), Taxus baccata L. (English yew), and Quercus petraea (Matt.) Liebl. (sessile oak). Phenotypic (height, diameter at breast height, crown size, bark thickness, biomass, straightness, forking, branch angle, fructification), regeneration, environmental in situ measurements (soil depth, vegetation cover, competition indices), and environmental modeling data extracted by using bilinear interpolation accounting for surrounding conditions of each tree (precipitation, temperature, insolation, drought indices) were obtained from trees in 194 sites covering the species’ geographic ranges and reflecting local environmental gradients. CONCLUSION: The GenTree Platform is a new resource for investigating ecological and evolutionary processes in forest trees. The coherent phenotyping and environmental characterization across 12 species in their European ranges allow for a wide range of analyses from forest ecologists, conservationists, and macro-ecologists. Also, the data here presented can be linked to the GenTree Dendroecological collection, the GenTree Leaf Trait collection, and the GenTree Genomic collection presented elsewhere, which together build the largest evolutionary forest ecology data collection available. Oxford University Press 2021-03-18 /pmc/articles/PMC7970660/ /pubmed/33734368 http://dx.doi.org/10.1093/gigascience/giab010 Text en © The Author(s) 2021. Published by Oxford University Press GigaScience. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Data Note Opgenoorth, Lars Dauphin, Benjamin Benavides, Raquel Heer, Katrin Alizoti, Paraskevi Martínez-Sancho, Elisabet Alía, Ricardo Ambrosio, Olivier Audrey, Albet Auñón, Francisco Avanzi, Camilla Avramidou, Evangelia Bagnoli, Francesca Barbas, Evangelos Bastias, Cristina C Bastien, Catherine Ballesteros, Eduardo Beffa, Giorgia Bernier, Frédéric Bignalet, Henri Bodineau, Guillaume Bouic, Damien Brodbeck, Sabine Brunetto, William Buchovska, Jurata Buy, Melanie Cabanillas-Saldaña, Ana M Carvalho, Bárbara Cheval, Nicolas Climent, José M Correard, Marianne Cremer, Eva Danusevičius, Darius Del Caño, Fernando Denou, Jean-Luc di Gerardi, Nicolas Dokhelar, Bernard Ducousso, Alexis Eskild Nilsen, Anne Farsakoglou, Anna-Maria Fonti, Patrick Ganopoulos, Ioannis García del Barrio, José M Gilg, Olivier González-Martínez, Santiago C Graf, René Gray, Alan Grivet, Delphine Gugerli, Felix Hartleitner, Christoph Hollenbach, Enja Hurel, Agathe Issehut, Bernard Jean, Florence Jorge, Veronique Jouineau, Arnaud Kappner, Jan-Philipp Kärkkäinen, Katri Kesälahti, Robert Knutzen, Florian Kujala, Sonja T Kumpula, Timo A Labriola, Mariaceleste Lalanne, Celine Lambertz, Johannes Lascoux, Martin Lejeune, Vincent Le-Provost, Gregoire Levillain, Joseph Liesebach, Mirko López-Quiroga, David Meier, Benjamin Malliarou, Ermioni Marchon, Jérémy Mariotte, Nicolas Mas, Antonio Matesanz, Silvia Meischner, Helge Michotey, Célia Milesi, Pascal Morganti, Sandro Nievergelt, Daniel Notivol, Eduardo Ostreng, Geir Pakull, Birte Perry, Annika Piotti, Andrea Plomion, Christophe Poinot, Nicolas Pringarbe, Mehdi Puzos, Luc Pyhäjärvi, Tanja Raffin, Annie Ramírez-Valiente, José A Rellstab, Christian Remi, Dourthe Richter, Sebastian Robledo-Arnuncio, Juan J San Segundo, Sergio Savolainen, Outi Schueler, Silvio Schneck, Volker Scotti, Ivan Semerikov, Vladimir Slámová, Lenka Sønstebø, Jørn Henrik Spanu, Ilaria Thevenet, Jean Tollefsrud, Mari Mette Turion, Norbert Vendramin, Giovanni Giuseppe Villar, Marc von Arx, Georg Westin, Johan Fady, Bruno Myking, Tor Valladares, Fernando Aravanopoulos, Filippos A Cavers, Stephen The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species |
| title | The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species |
| title_full | The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species |
| title_fullStr | The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species |
| title_full_unstemmed | The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species |
| title_short | The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species |
| title_sort | gentree platform: growth traits and tree-level environmental data in 12 european forest tree species |
| topic | Data Note |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7970660/ https://www.ncbi.nlm.nih.gov/pubmed/33734368 http://dx.doi.org/10.1093/gigascience/giab010 |
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