Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae

Xanthomonas oryzae pv. oryzae is a bacterial pathogen that gives rise to diseases in rice all over the world. A bacteriophage infecting this bacterium was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, which has a linear dsDNA genome of 309,023 bp and...

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Autores principales: Nazir, Amina, Dong, Zhaoxia, Liu, Jin, Tahir, Rana Adnan, Rasheed, Madiha, Qing, Hong, Peng, Donghai, Tong, Yigang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2021
Materias:
Annotated Sequence Record
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7970823/
https://www.ncbi.nlm.nih.gov/pubmed/33585960
http://dx.doi.org/10.1007/s00705-021-04985-4
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author Nazir, Amina
Dong, Zhaoxia
Liu, Jin
Tahir, Rana Adnan
Rasheed, Madiha
Qing, Hong
Peng, Donghai
Tong, Yigang
author_facet Nazir, Amina
Dong, Zhaoxia
Liu, Jin
Tahir, Rana Adnan
Rasheed, Madiha
Qing, Hong
Peng, Donghai
Tong, Yigang
author_sort Nazir, Amina
collection PubMed
description Xanthomonas oryzae pv. oryzae is a bacterial pathogen that gives rise to diseases in rice all over the world. A bacteriophage infecting this bacterium was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, which has a linear dsDNA genome of 309,023 bp and a G + C content of 42.43%. It contains 401 open reading frames and encodes 28 tRNAs. It belongs to the family Myoviridae and has a broad host range, making it a possible candidate for phage therapy. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00705-021-04985-4.
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spelling pubmed-79708232021-03-19 Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae Nazir, Amina Dong, Zhaoxia Liu, Jin Tahir, Rana Adnan Rasheed, Madiha Qing, Hong Peng, Donghai Tong, Yigang Arch Virol Annotated Sequence Record Xanthomonas oryzae pv. oryzae is a bacterial pathogen that gives rise to diseases in rice all over the world. A bacteriophage infecting this bacterium was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, which has a linear dsDNA genome of 309,023 bp and a G + C content of 42.43%. It contains 401 open reading frames and encodes 28 tRNAs. It belongs to the family Myoviridae and has a broad host range, making it a possible candidate for phage therapy. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00705-021-04985-4. Springer Vienna 2021-02-14 2021 /pmc/articles/PMC7970823/ /pubmed/33585960 http://dx.doi.org/10.1007/s00705-021-04985-4 Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH, AT part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Annotated Sequence Record
Nazir, Amina
Dong, Zhaoxia
Liu, Jin
Tahir, Rana Adnan
Rasheed, Madiha
Qing, Hong
Peng, Donghai
Tong, Yigang
Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae
title Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae
title_full Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae
title_fullStr Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae
title_full_unstemmed Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae
title_short Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae
title_sort genomic analysis of bacteriophage xoo-sp13 infecting xanthomonas oryzae pv. oryzae
topic Annotated Sequence Record
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7970823/
https://www.ncbi.nlm.nih.gov/pubmed/33585960
http://dx.doi.org/10.1007/s00705-021-04985-4
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