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Prediction of tau accumulation in prodromal Alzheimer’s disease using an ensemble machine learning approach
We developed machine learning (ML) algorithms to predict abnormal tau accumulation among patients with prodromal AD. We recruited 64 patients with prodromal AD using the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset. Supervised ML approaches based on the random forest (RF) and a gradien...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7970986/ https://www.ncbi.nlm.nih.gov/pubmed/33707488 http://dx.doi.org/10.1038/s41598-021-85165-x |
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author | Kim, Jaeho Park, Yuhyun Park, Seongbeom Jang, Hyemin Kim, Hee Jin Na, Duk L. Lee, Hyejoo Seo, Sang Won |
author_facet | Kim, Jaeho Park, Yuhyun Park, Seongbeom Jang, Hyemin Kim, Hee Jin Na, Duk L. Lee, Hyejoo Seo, Sang Won |
author_sort | Kim, Jaeho |
collection | PubMed |
description | We developed machine learning (ML) algorithms to predict abnormal tau accumulation among patients with prodromal AD. We recruited 64 patients with prodromal AD using the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset. Supervised ML approaches based on the random forest (RF) and a gradient boosting machine (GBM) were used. The GBM resulted in an AUC of 0.61 (95% confidence interval [CI] 0.579–0.647) with clinical data (age, sex, years of education) and a higher AUC of 0.817 (95% CI 0.804–0.830) with clinical and neuropsychological data. The highest AUC was 0.86 (95% CI 0.839–0.885) achieved with additional information such as cortical thickness in clinical data and neuropsychological results. Through the analysis of the impact order of the variables in each ML classifier, cortical thickness of the parietal lobe and occipital lobe and neuropsychological tests of memory domain were found to be more important features for each classifier. Our ML algorithms predicting tau burden may provide important information for the recruitment of participants in potential clinical trials of tau targeting therapies. |
format | Online Article Text |
id | pubmed-7970986 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-79709862021-03-19 Prediction of tau accumulation in prodromal Alzheimer’s disease using an ensemble machine learning approach Kim, Jaeho Park, Yuhyun Park, Seongbeom Jang, Hyemin Kim, Hee Jin Na, Duk L. Lee, Hyejoo Seo, Sang Won Sci Rep Article We developed machine learning (ML) algorithms to predict abnormal tau accumulation among patients with prodromal AD. We recruited 64 patients with prodromal AD using the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset. Supervised ML approaches based on the random forest (RF) and a gradient boosting machine (GBM) were used. The GBM resulted in an AUC of 0.61 (95% confidence interval [CI] 0.579–0.647) with clinical data (age, sex, years of education) and a higher AUC of 0.817 (95% CI 0.804–0.830) with clinical and neuropsychological data. The highest AUC was 0.86 (95% CI 0.839–0.885) achieved with additional information such as cortical thickness in clinical data and neuropsychological results. Through the analysis of the impact order of the variables in each ML classifier, cortical thickness of the parietal lobe and occipital lobe and neuropsychological tests of memory domain were found to be more important features for each classifier. Our ML algorithms predicting tau burden may provide important information for the recruitment of participants in potential clinical trials of tau targeting therapies. Nature Publishing Group UK 2021-03-11 /pmc/articles/PMC7970986/ /pubmed/33707488 http://dx.doi.org/10.1038/s41598-021-85165-x Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Kim, Jaeho Park, Yuhyun Park, Seongbeom Jang, Hyemin Kim, Hee Jin Na, Duk L. Lee, Hyejoo Seo, Sang Won Prediction of tau accumulation in prodromal Alzheimer’s disease using an ensemble machine learning approach |
title | Prediction of tau accumulation in prodromal Alzheimer’s disease using an ensemble machine learning approach |
title_full | Prediction of tau accumulation in prodromal Alzheimer’s disease using an ensemble machine learning approach |
title_fullStr | Prediction of tau accumulation in prodromal Alzheimer’s disease using an ensemble machine learning approach |
title_full_unstemmed | Prediction of tau accumulation in prodromal Alzheimer’s disease using an ensemble machine learning approach |
title_short | Prediction of tau accumulation in prodromal Alzheimer’s disease using an ensemble machine learning approach |
title_sort | prediction of tau accumulation in prodromal alzheimer’s disease using an ensemble machine learning approach |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7970986/ https://www.ncbi.nlm.nih.gov/pubmed/33707488 http://dx.doi.org/10.1038/s41598-021-85165-x |
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