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New thermodynamic activity-based approach allows predicting the feasibility of glycolysis

Thermodynamic feasibility analyses help evaluating the feasibility of metabolic pathways. This is an important information used to develop new biotechnological processes and to understand metabolic processes in cells. However, literature standard data are uncertain for most biochemical reactions yie...

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Autores principales: Greinert, Thorsten, Vogel, Kristina, Maskow, Thomas, Held, Christoph
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971085/
https://www.ncbi.nlm.nih.gov/pubmed/33731762
http://dx.doi.org/10.1038/s41598-021-85594-8
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author Greinert, Thorsten
Vogel, Kristina
Maskow, Thomas
Held, Christoph
author_facet Greinert, Thorsten
Vogel, Kristina
Maskow, Thomas
Held, Christoph
author_sort Greinert, Thorsten
collection PubMed
description Thermodynamic feasibility analyses help evaluating the feasibility of metabolic pathways. This is an important information used to develop new biotechnological processes and to understand metabolic processes in cells. However, literature standard data are uncertain for most biochemical reactions yielding wrong statements concerning their feasibility. In this article we present activity-based equilibrium constants for all the ten glycolytic reactions, accompanied by the standard reaction data (standard Gibbs energy of reaction and standard enthalpy of reaction). We further developed a thermodynamic activity-based approach that allows to correctly determine the feasibility of glycolysis under different chosen conditions. The results show for the first time that the feasibility of glycolysis can be explained by thermodynamics only if (1) correct standard data are used and if (2) the conditions in the cell at non-equilibrium states are accounted for in the analyses. The results here will help to determine the feasibility of other metabolisms and to understand metabolic processes in cells in the future.
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spelling pubmed-79710852021-03-19 New thermodynamic activity-based approach allows predicting the feasibility of glycolysis Greinert, Thorsten Vogel, Kristina Maskow, Thomas Held, Christoph Sci Rep Article Thermodynamic feasibility analyses help evaluating the feasibility of metabolic pathways. This is an important information used to develop new biotechnological processes and to understand metabolic processes in cells. However, literature standard data are uncertain for most biochemical reactions yielding wrong statements concerning their feasibility. In this article we present activity-based equilibrium constants for all the ten glycolytic reactions, accompanied by the standard reaction data (standard Gibbs energy of reaction and standard enthalpy of reaction). We further developed a thermodynamic activity-based approach that allows to correctly determine the feasibility of glycolysis under different chosen conditions. The results show for the first time that the feasibility of glycolysis can be explained by thermodynamics only if (1) correct standard data are used and if (2) the conditions in the cell at non-equilibrium states are accounted for in the analyses. The results here will help to determine the feasibility of other metabolisms and to understand metabolic processes in cells in the future. Nature Publishing Group UK 2021-03-17 /pmc/articles/PMC7971085/ /pubmed/33731762 http://dx.doi.org/10.1038/s41598-021-85594-8 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Greinert, Thorsten
Vogel, Kristina
Maskow, Thomas
Held, Christoph
New thermodynamic activity-based approach allows predicting the feasibility of glycolysis
title New thermodynamic activity-based approach allows predicting the feasibility of glycolysis
title_full New thermodynamic activity-based approach allows predicting the feasibility of glycolysis
title_fullStr New thermodynamic activity-based approach allows predicting the feasibility of glycolysis
title_full_unstemmed New thermodynamic activity-based approach allows predicting the feasibility of glycolysis
title_short New thermodynamic activity-based approach allows predicting the feasibility of glycolysis
title_sort new thermodynamic activity-based approach allows predicting the feasibility of glycolysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971085/
https://www.ncbi.nlm.nih.gov/pubmed/33731762
http://dx.doi.org/10.1038/s41598-021-85594-8
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