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Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae)
The complete chloroplast genome of Quercus virginiana was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Quercus with 161,221 bp in length, including a large single-copy (LSC: 90,553 bp) region and a small single-copy (SSC: 19,016 bp) which were...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971197/ https://www.ncbi.nlm.nih.gov/pubmed/33796661 http://dx.doi.org/10.1080/23802359.2021.1886004 |
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author | Liu, Dan Li, Wen-Qing Xie, Xiao-Man Liu, De-Shen Li, Feng Gao, Guangchen Zhuang, Zhen-Jie Lu, Yi-Zeng Li, Wei |
author_facet | Liu, Dan Li, Wen-Qing Xie, Xiao-Man Liu, De-Shen Li, Feng Gao, Guangchen Zhuang, Zhen-Jie Lu, Yi-Zeng Li, Wei |
author_sort | Liu, Dan |
collection | PubMed |
description | The complete chloroplast genome of Quercus virginiana was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Quercus with 161,221 bp in length, including a large single-copy (LSC: 90,553 bp) region and a small single-copy (SSC: 19,016 bp) which were separated by a pair of inverted repeats (IRa, b: 25,826 bp) region. The overall GC content is 36.9%. A total of 131 genes was annotated which contained 86 protein-coding genes including the Trans splicing gene of rps12, 37 tRNA genes, and 8 rRNA genes. ML phylogenetic analysis compared with 17 expressed chloroplast genomes revealed that Q. virginiana was a sister to other species of Quercus, which were grouped together with five species of Section Quercus and another 12 species of Quercus were divided into another group. |
format | Online Article Text |
id | pubmed-7971197 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-79711972021-03-31 Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae) Liu, Dan Li, Wen-Qing Xie, Xiao-Man Liu, De-Shen Li, Feng Gao, Guangchen Zhuang, Zhen-Jie Lu, Yi-Zeng Li, Wei Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Quercus virginiana was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Quercus with 161,221 bp in length, including a large single-copy (LSC: 90,553 bp) region and a small single-copy (SSC: 19,016 bp) which were separated by a pair of inverted repeats (IRa, b: 25,826 bp) region. The overall GC content is 36.9%. A total of 131 genes was annotated which contained 86 protein-coding genes including the Trans splicing gene of rps12, 37 tRNA genes, and 8 rRNA genes. ML phylogenetic analysis compared with 17 expressed chloroplast genomes revealed that Q. virginiana was a sister to other species of Quercus, which were grouped together with five species of Section Quercus and another 12 species of Quercus were divided into another group. Taylor & Francis 2021-03-15 /pmc/articles/PMC7971197/ /pubmed/33796661 http://dx.doi.org/10.1080/23802359.2021.1886004 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Liu, Dan Li, Wen-Qing Xie, Xiao-Man Liu, De-Shen Li, Feng Gao, Guangchen Zhuang, Zhen-Jie Lu, Yi-Zeng Li, Wei Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae) |
title | Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae) |
title_full | Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae) |
title_fullStr | Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae) |
title_short | Characterization of the complete chloroplast genome of Quercus virginiana Mill. (Fagaceae) |
title_sort | characterization of the complete chloroplast genome of quercus virginiana mill. (fagaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971197/ https://www.ncbi.nlm.nih.gov/pubmed/33796661 http://dx.doi.org/10.1080/23802359.2021.1886004 |
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