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The complete chloroplast genome of Abutilon theophrasti medic (Malvaceae)
Abutilon theophrasti Medic is a traditional Chinese medicine, which can be seen nearly everywhere in China. In order to study its complete chloroplast genome, we collected leaves and obtained chloroplast genome information through next-generation sequencing. It showed that the genome whole length is...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971203/ https://www.ncbi.nlm.nih.gov/pubmed/33796678 http://dx.doi.org/10.1080/23802359.2021.1886886 |
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author | Lv, Yanping Yi, Yuqi Han, Rongchun Tong, Xiaohui Takahashi, Hiroki |
author_facet | Lv, Yanping Yi, Yuqi Han, Rongchun Tong, Xiaohui Takahashi, Hiroki |
author_sort | Lv, Yanping |
collection | PubMed |
description | Abutilon theophrasti Medic is a traditional Chinese medicine, which can be seen nearly everywhere in China. In order to study its complete chloroplast genome, we collected leaves and obtained chloroplast genome information through next-generation sequencing. It showed that the genome whole length is 160,331 bp, resulted from 24,578,194 raw reads with 3,669,530,829 bases in total, and the GC contents ratio is 36.90%. Besides, the large single-copy region (LSC) is 89,006 bp, the small single-copy region (SSC) 20,149 bp, and inverted repeat (IR) 25,588 bp. The chloroplast genome encodes 76 genes, which contains 38 protein genes, five rRNA genes, and 33 tRNA. By conducting phylogenetic analysis for A.theophrasti, plants from genus Gossypium demonstrated close relationship with it. |
format | Online Article Text |
id | pubmed-7971203 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-79712032021-03-31 The complete chloroplast genome of Abutilon theophrasti medic (Malvaceae) Lv, Yanping Yi, Yuqi Han, Rongchun Tong, Xiaohui Takahashi, Hiroki Mitochondrial DNA B Resour Mitogenome Announcement Abutilon theophrasti Medic is a traditional Chinese medicine, which can be seen nearly everywhere in China. In order to study its complete chloroplast genome, we collected leaves and obtained chloroplast genome information through next-generation sequencing. It showed that the genome whole length is 160,331 bp, resulted from 24,578,194 raw reads with 3,669,530,829 bases in total, and the GC contents ratio is 36.90%. Besides, the large single-copy region (LSC) is 89,006 bp, the small single-copy region (SSC) 20,149 bp, and inverted repeat (IR) 25,588 bp. The chloroplast genome encodes 76 genes, which contains 38 protein genes, five rRNA genes, and 33 tRNA. By conducting phylogenetic analysis for A.theophrasti, plants from genus Gossypium demonstrated close relationship with it. Taylor & Francis 2021-03-16 /pmc/articles/PMC7971203/ /pubmed/33796678 http://dx.doi.org/10.1080/23802359.2021.1886886 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Lv, Yanping Yi, Yuqi Han, Rongchun Tong, Xiaohui Takahashi, Hiroki The complete chloroplast genome of Abutilon theophrasti medic (Malvaceae) |
title | The complete chloroplast genome of Abutilon theophrasti medic (Malvaceae) |
title_full | The complete chloroplast genome of Abutilon theophrasti medic (Malvaceae) |
title_fullStr | The complete chloroplast genome of Abutilon theophrasti medic (Malvaceae) |
title_full_unstemmed | The complete chloroplast genome of Abutilon theophrasti medic (Malvaceae) |
title_short | The complete chloroplast genome of Abutilon theophrasti medic (Malvaceae) |
title_sort | complete chloroplast genome of abutilon theophrasti medic (malvaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971203/ https://www.ncbi.nlm.nih.gov/pubmed/33796678 http://dx.doi.org/10.1080/23802359.2021.1886886 |
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