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The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis
Lonicera fulvotomentosa Hsu et S. C. Cheng is widely used as an edible and medicinal food in China and also displays excellent pharmacological activities. The phylogenetic relationship between L. fulvotomentosa and other family members remains unclear. In this work, we assembled the cp genome of L....
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971229/ https://www.ncbi.nlm.nih.gov/pubmed/33796650 http://dx.doi.org/10.1080/23802359.2021.1884027 |
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author | Yu, Zhengwen Yi, Yin Gu, Lei |
author_facet | Yu, Zhengwen Yi, Yin Gu, Lei |
author_sort | Yu, Zhengwen |
collection | PubMed |
description | Lonicera fulvotomentosa Hsu et S. C. Cheng is widely used as an edible and medicinal food in China and also displays excellent pharmacological activities. The phylogenetic relationship between L. fulvotomentosa and other family members remains unclear. In this work, we assembled the cp genome of L. fulvotomentosa using the high-throughput Illumina pair-end sequencing data. The circular cp genome is 155,102 bp in size, including a large single-copy (LSC) region of 88,906 bp and a small single-copy (SSC) region of 18,628 bp, which were separated by two inverted repeat (IR) regions (23,784 bp each). A total of 129 genes were predicted, including eight ribosomal RNAs (rRNAs), 39 transfer RNAs (tRNAs), and 82 protein-coding genes (PCGs). Furthermore, phylogenetic analysis revealed that L. fulvotomentosa formed a different clade from other two congeneric species (Lonicera confuse and Lonicera japonica). This study provides useful information for future genetic study of L. fulvotomentosa. |
format | Online Article Text |
id | pubmed-7971229 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-79712292021-03-31 The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis Yu, Zhengwen Yi, Yin Gu, Lei Mitochondrial DNA B Resour Mitogenome Announcement Lonicera fulvotomentosa Hsu et S. C. Cheng is widely used as an edible and medicinal food in China and also displays excellent pharmacological activities. The phylogenetic relationship between L. fulvotomentosa and other family members remains unclear. In this work, we assembled the cp genome of L. fulvotomentosa using the high-throughput Illumina pair-end sequencing data. The circular cp genome is 155,102 bp in size, including a large single-copy (LSC) region of 88,906 bp and a small single-copy (SSC) region of 18,628 bp, which were separated by two inverted repeat (IR) regions (23,784 bp each). A total of 129 genes were predicted, including eight ribosomal RNAs (rRNAs), 39 transfer RNAs (tRNAs), and 82 protein-coding genes (PCGs). Furthermore, phylogenetic analysis revealed that L. fulvotomentosa formed a different clade from other two congeneric species (Lonicera confuse and Lonicera japonica). This study provides useful information for future genetic study of L. fulvotomentosa. Taylor & Francis 2021-03-15 /pmc/articles/PMC7971229/ /pubmed/33796650 http://dx.doi.org/10.1080/23802359.2021.1884027 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yu, Zhengwen Yi, Yin Gu, Lei The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis |
title | The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis |
title_full | The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis |
title_fullStr | The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis |
title_full_unstemmed | The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis |
title_short | The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis |
title_sort | complete chloroplast genome of lonicera fulvotomentosa hsu et s. c. cheng and its phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971229/ https://www.ncbi.nlm.nih.gov/pubmed/33796650 http://dx.doi.org/10.1080/23802359.2021.1884027 |
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