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The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis

Lonicera fulvotomentosa Hsu et S. C. Cheng is widely used as an edible and medicinal food in China and also displays excellent pharmacological activities. The phylogenetic relationship between L. fulvotomentosa and other family members remains unclear. In this work, we assembled the cp genome of L....

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Detalles Bibliográficos
Autores principales: Yu, Zhengwen, Yi, Yin, Gu, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971229/
https://www.ncbi.nlm.nih.gov/pubmed/33796650
http://dx.doi.org/10.1080/23802359.2021.1884027
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author Yu, Zhengwen
Yi, Yin
Gu, Lei
author_facet Yu, Zhengwen
Yi, Yin
Gu, Lei
author_sort Yu, Zhengwen
collection PubMed
description Lonicera fulvotomentosa Hsu et S. C. Cheng is widely used as an edible and medicinal food in China and also displays excellent pharmacological activities. The phylogenetic relationship between L. fulvotomentosa and other family members remains unclear. In this work, we assembled the cp genome of L. fulvotomentosa using the high-throughput Illumina pair-end sequencing data. The circular cp genome is 155,102 bp in size, including a large single-copy (LSC) region of 88,906 bp and a small single-copy (SSC) region of 18,628 bp, which were separated by two inverted repeat (IR) regions (23,784 bp each). A total of 129 genes were predicted, including eight ribosomal RNAs (rRNAs), 39 transfer RNAs (tRNAs), and 82 protein-coding genes (PCGs). Furthermore, phylogenetic analysis revealed that L. fulvotomentosa formed a different clade from other two congeneric species (Lonicera confuse and Lonicera japonica). This study provides useful information for future genetic study of L. fulvotomentosa.
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spelling pubmed-79712292021-03-31 The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis Yu, Zhengwen Yi, Yin Gu, Lei Mitochondrial DNA B Resour Mitogenome Announcement Lonicera fulvotomentosa Hsu et S. C. Cheng is widely used as an edible and medicinal food in China and also displays excellent pharmacological activities. The phylogenetic relationship between L. fulvotomentosa and other family members remains unclear. In this work, we assembled the cp genome of L. fulvotomentosa using the high-throughput Illumina pair-end sequencing data. The circular cp genome is 155,102 bp in size, including a large single-copy (LSC) region of 88,906 bp and a small single-copy (SSC) region of 18,628 bp, which were separated by two inverted repeat (IR) regions (23,784 bp each). A total of 129 genes were predicted, including eight ribosomal RNAs (rRNAs), 39 transfer RNAs (tRNAs), and 82 protein-coding genes (PCGs). Furthermore, phylogenetic analysis revealed that L. fulvotomentosa formed a different clade from other two congeneric species (Lonicera confuse and Lonicera japonica). This study provides useful information for future genetic study of L. fulvotomentosa. Taylor & Francis 2021-03-15 /pmc/articles/PMC7971229/ /pubmed/33796650 http://dx.doi.org/10.1080/23802359.2021.1884027 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yu, Zhengwen
Yi, Yin
Gu, Lei
The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis
title The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis
title_full The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis
title_fullStr The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis
title_short The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis
title_sort complete chloroplast genome of lonicera fulvotomentosa hsu et s. c. cheng and its phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971229/
https://www.ncbi.nlm.nih.gov/pubmed/33796650
http://dx.doi.org/10.1080/23802359.2021.1884027
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