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Optimal prediction with resource constraints using the information bottleneck
Responding to stimuli requires that organisms encode information about the external world. Not all parts of the input are important for behavior, and resource limitations demand that signals be compressed. Prediction of the future input is widely beneficial in many biological systems. We compute the...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971903/ https://www.ncbi.nlm.nih.gov/pubmed/33684112 http://dx.doi.org/10.1371/journal.pcbi.1008743 |
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author | Sachdeva, Vedant Mora, Thierry Walczak, Aleksandra M. Palmer, Stephanie E. |
author_facet | Sachdeva, Vedant Mora, Thierry Walczak, Aleksandra M. Palmer, Stephanie E. |
author_sort | Sachdeva, Vedant |
collection | PubMed |
description | Responding to stimuli requires that organisms encode information about the external world. Not all parts of the input are important for behavior, and resource limitations demand that signals be compressed. Prediction of the future input is widely beneficial in many biological systems. We compute the trade-offs between representing the past faithfully and predicting the future using the information bottleneck approach, for input dynamics with different levels of complexity. For motion prediction, we show that, depending on the parameters in the input dynamics, velocity or position information is more useful for accurate prediction. We show which motion representations are easiest to re-use for accurate prediction in other motion contexts, and identify and quantify those with the highest transferability. For non-Markovian dynamics, we explore the role of long-term memory in shaping the internal representation. Lastly, we show that prediction in evolutionary population dynamics is linked to clustering allele frequencies into non-overlapping memories. |
format | Online Article Text |
id | pubmed-7971903 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-79719032021-03-30 Optimal prediction with resource constraints using the information bottleneck Sachdeva, Vedant Mora, Thierry Walczak, Aleksandra M. Palmer, Stephanie E. PLoS Comput Biol Research Article Responding to stimuli requires that organisms encode information about the external world. Not all parts of the input are important for behavior, and resource limitations demand that signals be compressed. Prediction of the future input is widely beneficial in many biological systems. We compute the trade-offs between representing the past faithfully and predicting the future using the information bottleneck approach, for input dynamics with different levels of complexity. For motion prediction, we show that, depending on the parameters in the input dynamics, velocity or position information is more useful for accurate prediction. We show which motion representations are easiest to re-use for accurate prediction in other motion contexts, and identify and quantify those with the highest transferability. For non-Markovian dynamics, we explore the role of long-term memory in shaping the internal representation. Lastly, we show that prediction in evolutionary population dynamics is linked to clustering allele frequencies into non-overlapping memories. Public Library of Science 2021-03-08 /pmc/articles/PMC7971903/ /pubmed/33684112 http://dx.doi.org/10.1371/journal.pcbi.1008743 Text en © 2021 Sachdeva et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Sachdeva, Vedant Mora, Thierry Walczak, Aleksandra M. Palmer, Stephanie E. Optimal prediction with resource constraints using the information bottleneck |
title | Optimal prediction with resource constraints using the information bottleneck |
title_full | Optimal prediction with resource constraints using the information bottleneck |
title_fullStr | Optimal prediction with resource constraints using the information bottleneck |
title_full_unstemmed | Optimal prediction with resource constraints using the information bottleneck |
title_short | Optimal prediction with resource constraints using the information bottleneck |
title_sort | optimal prediction with resource constraints using the information bottleneck |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971903/ https://www.ncbi.nlm.nih.gov/pubmed/33684112 http://dx.doi.org/10.1371/journal.pcbi.1008743 |
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