Cargando…

Optimal prediction with resource constraints using the information bottleneck

Responding to stimuli requires that organisms encode information about the external world. Not all parts of the input are important for behavior, and resource limitations demand that signals be compressed. Prediction of the future input is widely beneficial in many biological systems. We compute the...

Descripción completa

Detalles Bibliográficos
Autores principales: Sachdeva, Vedant, Mora, Thierry, Walczak, Aleksandra M., Palmer, Stephanie E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971903/
https://www.ncbi.nlm.nih.gov/pubmed/33684112
http://dx.doi.org/10.1371/journal.pcbi.1008743
_version_ 1783666666662526976
author Sachdeva, Vedant
Mora, Thierry
Walczak, Aleksandra M.
Palmer, Stephanie E.
author_facet Sachdeva, Vedant
Mora, Thierry
Walczak, Aleksandra M.
Palmer, Stephanie E.
author_sort Sachdeva, Vedant
collection PubMed
description Responding to stimuli requires that organisms encode information about the external world. Not all parts of the input are important for behavior, and resource limitations demand that signals be compressed. Prediction of the future input is widely beneficial in many biological systems. We compute the trade-offs between representing the past faithfully and predicting the future using the information bottleneck approach, for input dynamics with different levels of complexity. For motion prediction, we show that, depending on the parameters in the input dynamics, velocity or position information is more useful for accurate prediction. We show which motion representations are easiest to re-use for accurate prediction in other motion contexts, and identify and quantify those with the highest transferability. For non-Markovian dynamics, we explore the role of long-term memory in shaping the internal representation. Lastly, we show that prediction in evolutionary population dynamics is linked to clustering allele frequencies into non-overlapping memories.
format Online
Article
Text
id pubmed-7971903
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-79719032021-03-30 Optimal prediction with resource constraints using the information bottleneck Sachdeva, Vedant Mora, Thierry Walczak, Aleksandra M. Palmer, Stephanie E. PLoS Comput Biol Research Article Responding to stimuli requires that organisms encode information about the external world. Not all parts of the input are important for behavior, and resource limitations demand that signals be compressed. Prediction of the future input is widely beneficial in many biological systems. We compute the trade-offs between representing the past faithfully and predicting the future using the information bottleneck approach, for input dynamics with different levels of complexity. For motion prediction, we show that, depending on the parameters in the input dynamics, velocity or position information is more useful for accurate prediction. We show which motion representations are easiest to re-use for accurate prediction in other motion contexts, and identify and quantify those with the highest transferability. For non-Markovian dynamics, we explore the role of long-term memory in shaping the internal representation. Lastly, we show that prediction in evolutionary population dynamics is linked to clustering allele frequencies into non-overlapping memories. Public Library of Science 2021-03-08 /pmc/articles/PMC7971903/ /pubmed/33684112 http://dx.doi.org/10.1371/journal.pcbi.1008743 Text en © 2021 Sachdeva et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Sachdeva, Vedant
Mora, Thierry
Walczak, Aleksandra M.
Palmer, Stephanie E.
Optimal prediction with resource constraints using the information bottleneck
title Optimal prediction with resource constraints using the information bottleneck
title_full Optimal prediction with resource constraints using the information bottleneck
title_fullStr Optimal prediction with resource constraints using the information bottleneck
title_full_unstemmed Optimal prediction with resource constraints using the information bottleneck
title_short Optimal prediction with resource constraints using the information bottleneck
title_sort optimal prediction with resource constraints using the information bottleneck
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7971903/
https://www.ncbi.nlm.nih.gov/pubmed/33684112
http://dx.doi.org/10.1371/journal.pcbi.1008743
work_keys_str_mv AT sachdevavedant optimalpredictionwithresourceconstraintsusingtheinformationbottleneck
AT morathierry optimalpredictionwithresourceconstraintsusingtheinformationbottleneck
AT walczakaleksandram optimalpredictionwithresourceconstraintsusingtheinformationbottleneck
AT palmerstephaniee optimalpredictionwithresourceconstraintsusingtheinformationbottleneck