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The production and characterization of SARS-CoV-2 RNA reference material

SARS-CoV-2 in vitro transcribed RNA reference materials (RM), UME RM 2019 and UME RM 2020, were produced by Scientific and Technological Research Council of Turkey (TUBITAK), National Metrology Institute (UME), to be used as a quality control material for SARS-CoV-2 measurements, in liquid-frozen an...

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Autores principales: Akyurek, Sema, Demirci, Sumeyra Nur Sanal, Bayrak, Zeynep, Isleyen, Alper, Akgoz, Muslum
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7972944/
https://www.ncbi.nlm.nih.gov/pubmed/33738508
http://dx.doi.org/10.1007/s00216-021-03284-w
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author Akyurek, Sema
Demirci, Sumeyra Nur Sanal
Bayrak, Zeynep
Isleyen, Alper
Akgoz, Muslum
author_facet Akyurek, Sema
Demirci, Sumeyra Nur Sanal
Bayrak, Zeynep
Isleyen, Alper
Akgoz, Muslum
author_sort Akyurek, Sema
collection PubMed
description SARS-CoV-2 in vitro transcribed RNA reference materials (RM), UME RM 2019 and UME RM 2020, were produced by Scientific and Technological Research Council of Turkey (TUBITAK), National Metrology Institute (UME), to be used as a quality control material for SARS-CoV-2 measurements, in liquid-frozen and lyophilized forms, respectively. These RNA RMs include ten internationally recommended SARS-CoV-2 target gene fragments (Pasteur-RdRp-IP2, Pasteur-RdRp-IP4, Charite-E, Charite-RdRp, CDC-N1, CDC-N2, China CDC-ORF1ab, China CDC-N, Hong Kong-ORF1b, and Hong Kong-N) for virus detection and one human gene fragment (RNase P) as an internal control. Two different platforms, RT-qPCR and RT-ddPCR, were used to characterize UME RM 2019 (UME RM 2020 was only characterized with RT-qPCR). The homogeneity studies were evaluated by RT-qPCR. According to these results, it has been shown that both reference materials are homogeneous for intended use. Short-term studies were also conducted similarly for mimicking transport conditions and UME RM 2020, which is produced in lyophilized form, unlike other reference materials available in the market, provides convenience for users by ensuring that the reference material remains stable for 17 days even at 45 °C temperature. The lyophilized formulation of the reference material had greater stability which would allow it to be shipped without cooling items. The development of such RNA reference materials provides quality control for existing and newly designed RNA-based virus detection tests and it helps the prevention and control of epidemics. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00216-021-03284-w.
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spelling pubmed-79729442021-03-19 The production and characterization of SARS-CoV-2 RNA reference material Akyurek, Sema Demirci, Sumeyra Nur Sanal Bayrak, Zeynep Isleyen, Alper Akgoz, Muslum Anal Bioanal Chem Research Paper SARS-CoV-2 in vitro transcribed RNA reference materials (RM), UME RM 2019 and UME RM 2020, were produced by Scientific and Technological Research Council of Turkey (TUBITAK), National Metrology Institute (UME), to be used as a quality control material for SARS-CoV-2 measurements, in liquid-frozen and lyophilized forms, respectively. These RNA RMs include ten internationally recommended SARS-CoV-2 target gene fragments (Pasteur-RdRp-IP2, Pasteur-RdRp-IP4, Charite-E, Charite-RdRp, CDC-N1, CDC-N2, China CDC-ORF1ab, China CDC-N, Hong Kong-ORF1b, and Hong Kong-N) for virus detection and one human gene fragment (RNase P) as an internal control. Two different platforms, RT-qPCR and RT-ddPCR, were used to characterize UME RM 2019 (UME RM 2020 was only characterized with RT-qPCR). The homogeneity studies were evaluated by RT-qPCR. According to these results, it has been shown that both reference materials are homogeneous for intended use. Short-term studies were also conducted similarly for mimicking transport conditions and UME RM 2020, which is produced in lyophilized form, unlike other reference materials available in the market, provides convenience for users by ensuring that the reference material remains stable for 17 days even at 45 °C temperature. The lyophilized formulation of the reference material had greater stability which would allow it to be shipped without cooling items. The development of such RNA reference materials provides quality control for existing and newly designed RNA-based virus detection tests and it helps the prevention and control of epidemics. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00216-021-03284-w. Springer Berlin Heidelberg 2021-03-19 2021 /pmc/articles/PMC7972944/ /pubmed/33738508 http://dx.doi.org/10.1007/s00216-021-03284-w Text en © Springer-Verlag GmbH Germany, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Research Paper
Akyurek, Sema
Demirci, Sumeyra Nur Sanal
Bayrak, Zeynep
Isleyen, Alper
Akgoz, Muslum
The production and characterization of SARS-CoV-2 RNA reference material
title The production and characterization of SARS-CoV-2 RNA reference material
title_full The production and characterization of SARS-CoV-2 RNA reference material
title_fullStr The production and characterization of SARS-CoV-2 RNA reference material
title_full_unstemmed The production and characterization of SARS-CoV-2 RNA reference material
title_short The production and characterization of SARS-CoV-2 RNA reference material
title_sort production and characterization of sars-cov-2 rna reference material
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7972944/
https://www.ncbi.nlm.nih.gov/pubmed/33738508
http://dx.doi.org/10.1007/s00216-021-03284-w
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