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Method and Computer System for Dialog Optimization of Aging Biomarker Panels for Biological Age Assessment

A concept, method, algorithm, and computer system (CS) of step-by-step dialog optimization of biomarker (BM) panels for assessing human biological age (BA) according to a number of universal criteria based on incomplete and noisy data have been developed. This system provides the ability to automati...

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Autores principales: Krut'ko, Vyacheslav N., Dontsov, Vitaly I., Ermakova, Nina A., Makarova, Valentina V., Mitrokhin, Oleg V., Shashina, Ekaterina A., Shcherbakov, Denis V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7973283/
https://www.ncbi.nlm.nih.gov/pubmed/33747048
http://dx.doi.org/10.3389/fgene.2021.634734
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author Krut'ko, Vyacheslav N.
Dontsov, Vitaly I.
Ermakova, Nina A.
Makarova, Valentina V.
Mitrokhin, Oleg V.
Shashina, Ekaterina A.
Shcherbakov, Denis V.
author_facet Krut'ko, Vyacheslav N.
Dontsov, Vitaly I.
Ermakova, Nina A.
Makarova, Valentina V.
Mitrokhin, Oleg V.
Shashina, Ekaterina A.
Shcherbakov, Denis V.
author_sort Krut'ko, Vyacheslav N.
collection PubMed
description A concept, method, algorithm, and computer system (CS) of step-by-step dialog optimization of biomarker (BM) panels for assessing human biological age (BA) according to a number of universal criteria based on incomplete and noisy data have been developed. This system provides the ability to automatically build BM panels for BA assessment and to increase the accuracy of BA determination while reducing the number of measured BMs. The optimization criteria are as follows: high correlation of BMs with chronological age (CA); minimum size of BM panels, obtained by rejecting highly cross-correlated BMs; high accuracy of BA assessment; high accuracy of BA/CA dependency interpolation; absence of outliers in BM values, which reduce the BA assessment accuracy; rejection of panels resulting in a high standard deviation for the BA-CA difference; and possible additional criteria entered by the researcher according to the task specifics. The CS input consists of data on physiological, biochemical, and other BMs that change with age. The CS output is a panel of BMs optimized according to the specified optimization criteria. The CS is user-friendly. It allows the user to add optimization criteria that the researcher considers to be important or to remove criteria that the user considers incorrect. The CS may be used in solving practical problems of anti-aging medicine, such as the treatment and prevention of age-related chronic non-infectious diseases representing the main causes of death. The authors' point of view on the role and place of BA diagnostics in this area is discussed.
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spelling pubmed-79732832021-03-20 Method and Computer System for Dialog Optimization of Aging Biomarker Panels for Biological Age Assessment Krut'ko, Vyacheslav N. Dontsov, Vitaly I. Ermakova, Nina A. Makarova, Valentina V. Mitrokhin, Oleg V. Shashina, Ekaterina A. Shcherbakov, Denis V. Front Genet Genetics A concept, method, algorithm, and computer system (CS) of step-by-step dialog optimization of biomarker (BM) panels for assessing human biological age (BA) according to a number of universal criteria based on incomplete and noisy data have been developed. This system provides the ability to automatically build BM panels for BA assessment and to increase the accuracy of BA determination while reducing the number of measured BMs. The optimization criteria are as follows: high correlation of BMs with chronological age (CA); minimum size of BM panels, obtained by rejecting highly cross-correlated BMs; high accuracy of BA assessment; high accuracy of BA/CA dependency interpolation; absence of outliers in BM values, which reduce the BA assessment accuracy; rejection of panels resulting in a high standard deviation for the BA-CA difference; and possible additional criteria entered by the researcher according to the task specifics. The CS input consists of data on physiological, biochemical, and other BMs that change with age. The CS output is a panel of BMs optimized according to the specified optimization criteria. The CS is user-friendly. It allows the user to add optimization criteria that the researcher considers to be important or to remove criteria that the user considers incorrect. The CS may be used in solving practical problems of anti-aging medicine, such as the treatment and prevention of age-related chronic non-infectious diseases representing the main causes of death. The authors' point of view on the role and place of BA diagnostics in this area is discussed. Frontiers Media S.A. 2021-03-05 /pmc/articles/PMC7973283/ /pubmed/33747048 http://dx.doi.org/10.3389/fgene.2021.634734 Text en Copyright © 2021 Krut'ko, Dontsov, Ermakova, Makarova, Mitrokhin, Shashina and Shcherbakov. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Krut'ko, Vyacheslav N.
Dontsov, Vitaly I.
Ermakova, Nina A.
Makarova, Valentina V.
Mitrokhin, Oleg V.
Shashina, Ekaterina A.
Shcherbakov, Denis V.
Method and Computer System for Dialog Optimization of Aging Biomarker Panels for Biological Age Assessment
title Method and Computer System for Dialog Optimization of Aging Biomarker Panels for Biological Age Assessment
title_full Method and Computer System for Dialog Optimization of Aging Biomarker Panels for Biological Age Assessment
title_fullStr Method and Computer System for Dialog Optimization of Aging Biomarker Panels for Biological Age Assessment
title_full_unstemmed Method and Computer System for Dialog Optimization of Aging Biomarker Panels for Biological Age Assessment
title_short Method and Computer System for Dialog Optimization of Aging Biomarker Panels for Biological Age Assessment
title_sort method and computer system for dialog optimization of aging biomarker panels for biological age assessment
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7973283/
https://www.ncbi.nlm.nih.gov/pubmed/33747048
http://dx.doi.org/10.3389/fgene.2021.634734
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