Cargando…

Novel biomarkers for post-contrast acute kidney injury identified from long non-coding RNA expression profiles

Background: Post-contrast acute kidney injury (PC-AKI) is a severe complication of cardiac catheterization. Emerging evidence indicated that long non-coding RNAs (lncRNAs) could serve as biomarkers for various diseases. However, the lncRNA expression profile and potential biomarkers in PC-AKI remain...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Guanzhong, Liu, Bowen, Chen, Shiqun, Li, Huanqiang, Liu, Jin, Mai, Ziling, Chen, Enzhao, Zhou, Chunyun, Sun, Guoli, Guo, Zhaodong, Lei, Li, Huang, Shanyi, Zhang, Liyao, Li, Min, Tan, Ning, Li, Hong, Liao, Yulin, Liu, Jia, Chen, Jiyan, Liu, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7975710/
https://www.ncbi.nlm.nih.gov/pubmed/33767596
http://dx.doi.org/10.7150/ijbs.45294
_version_ 1783666969838354432
author Chen, Guanzhong
Liu, Bowen
Chen, Shiqun
Li, Huanqiang
Liu, Jin
Mai, Ziling
Chen, Enzhao
Zhou, Chunyun
Sun, Guoli
Guo, Zhaodong
Lei, Li
Huang, Shanyi
Zhang, Liyao
Li, Min
Tan, Ning
Li, Hong
Liao, Yulin
Liu, Jia
Chen, Jiyan
Liu, Yong
author_facet Chen, Guanzhong
Liu, Bowen
Chen, Shiqun
Li, Huanqiang
Liu, Jin
Mai, Ziling
Chen, Enzhao
Zhou, Chunyun
Sun, Guoli
Guo, Zhaodong
Lei, Li
Huang, Shanyi
Zhang, Liyao
Li, Min
Tan, Ning
Li, Hong
Liao, Yulin
Liu, Jia
Chen, Jiyan
Liu, Yong
author_sort Chen, Guanzhong
collection PubMed
description Background: Post-contrast acute kidney injury (PC-AKI) is a severe complication of cardiac catheterization. Emerging evidence indicated that long non-coding RNAs (lncRNAs) could serve as biomarkers for various diseases. However, the lncRNA expression profile and potential biomarkers in PC-AKI remain unclear. This study aimed to investigate novel lncRNA biomarkers for the early detection of PC-AKI. Methods: lncRNA profile in the kidney tissues of PC-AKI rats was evaluated through RNA sequencing. Potential lncRNA biomarkers were identified through human-rat homology analysis, kidney and blood filtering in rats and verified in 112 clinical samples. The expression patterns of the candidate lncRNAs were detected in HK-2 cells and rat models to evaluate their potential for early detection. Results: In total, 357 lncRNAs were found to be differentially expressed in PC-AKI. We identified lnc-HILPDA and lnc-PRND were conservative and remarkably upregulated in both kidneys and blood from rats and the blood of PC-AKI patients; these lncRNAs can precisely distinguish PC-AKI patients (area under the curve (AUC) values of 0.885 and 0.875, respectively). The combination of these two lncRNAs exhibited improved accuracy for predicting PC-AKI, with 100% sensitivity and 83.93% specificity. Time-course experiments showed that the significant difference was first noted in the blood of PC-AKI rats at 12 h for lnc-HILPDA and 24 h for lnc-PRND. Conclusion: Our study revealed that lnc-HILPDA and lnc-PRND may serve as the novel biomarkers for early detection and profoundly affect the clinical stratification and strategy guidance of PC-AKI.
format Online
Article
Text
id pubmed-7975710
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Ivyspring International Publisher
record_format MEDLINE/PubMed
spelling pubmed-79757102021-03-24 Novel biomarkers for post-contrast acute kidney injury identified from long non-coding RNA expression profiles Chen, Guanzhong Liu, Bowen Chen, Shiqun Li, Huanqiang Liu, Jin Mai, Ziling Chen, Enzhao Zhou, Chunyun Sun, Guoli Guo, Zhaodong Lei, Li Huang, Shanyi Zhang, Liyao Li, Min Tan, Ning Li, Hong Liao, Yulin Liu, Jia Chen, Jiyan Liu, Yong Int J Biol Sci Research Paper Background: Post-contrast acute kidney injury (PC-AKI) is a severe complication of cardiac catheterization. Emerging evidence indicated that long non-coding RNAs (lncRNAs) could serve as biomarkers for various diseases. However, the lncRNA expression profile and potential biomarkers in PC-AKI remain unclear. This study aimed to investigate novel lncRNA biomarkers for the early detection of PC-AKI. Methods: lncRNA profile in the kidney tissues of PC-AKI rats was evaluated through RNA sequencing. Potential lncRNA biomarkers were identified through human-rat homology analysis, kidney and blood filtering in rats and verified in 112 clinical samples. The expression patterns of the candidate lncRNAs were detected in HK-2 cells and rat models to evaluate their potential for early detection. Results: In total, 357 lncRNAs were found to be differentially expressed in PC-AKI. We identified lnc-HILPDA and lnc-PRND were conservative and remarkably upregulated in both kidneys and blood from rats and the blood of PC-AKI patients; these lncRNAs can precisely distinguish PC-AKI patients (area under the curve (AUC) values of 0.885 and 0.875, respectively). The combination of these two lncRNAs exhibited improved accuracy for predicting PC-AKI, with 100% sensitivity and 83.93% specificity. Time-course experiments showed that the significant difference was first noted in the blood of PC-AKI rats at 12 h for lnc-HILPDA and 24 h for lnc-PRND. Conclusion: Our study revealed that lnc-HILPDA and lnc-PRND may serve as the novel biomarkers for early detection and profoundly affect the clinical stratification and strategy guidance of PC-AKI. Ivyspring International Publisher 2021-02-17 /pmc/articles/PMC7975710/ /pubmed/33767596 http://dx.doi.org/10.7150/ijbs.45294 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Chen, Guanzhong
Liu, Bowen
Chen, Shiqun
Li, Huanqiang
Liu, Jin
Mai, Ziling
Chen, Enzhao
Zhou, Chunyun
Sun, Guoli
Guo, Zhaodong
Lei, Li
Huang, Shanyi
Zhang, Liyao
Li, Min
Tan, Ning
Li, Hong
Liao, Yulin
Liu, Jia
Chen, Jiyan
Liu, Yong
Novel biomarkers for post-contrast acute kidney injury identified from long non-coding RNA expression profiles
title Novel biomarkers for post-contrast acute kidney injury identified from long non-coding RNA expression profiles
title_full Novel biomarkers for post-contrast acute kidney injury identified from long non-coding RNA expression profiles
title_fullStr Novel biomarkers for post-contrast acute kidney injury identified from long non-coding RNA expression profiles
title_full_unstemmed Novel biomarkers for post-contrast acute kidney injury identified from long non-coding RNA expression profiles
title_short Novel biomarkers for post-contrast acute kidney injury identified from long non-coding RNA expression profiles
title_sort novel biomarkers for post-contrast acute kidney injury identified from long non-coding rna expression profiles
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7975710/
https://www.ncbi.nlm.nih.gov/pubmed/33767596
http://dx.doi.org/10.7150/ijbs.45294
work_keys_str_mv AT chenguanzhong novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT liubowen novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT chenshiqun novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT lihuanqiang novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT liujin novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT maiziling novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT chenenzhao novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT zhouchunyun novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT sunguoli novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT guozhaodong novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT leili novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT huangshanyi novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT zhangliyao novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT limin novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT tanning novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT lihong novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT liaoyulin novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT liujia novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT chenjiyan novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles
AT liuyong novelbiomarkersforpostcontrastacutekidneyinjuryidentifiedfromlongnoncodingrnaexpressionprofiles