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sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application

BACKGROUND: Cancer epidemiology studies require sufficient power to assess spatial relationships between exposures and cancer incidence accurately. However, methods for power calculations of spatial statistics are complicated and underdeveloped, and therefore underutilized by investigators. The spat...

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Autores principales: Buller, Ian D., Brown, Derek W., Myers, Timothy A., Jones, Rena R., Machiela, Mitchell J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7977178/
https://www.ncbi.nlm.nih.gov/pubmed/33736677
http://dx.doi.org/10.1186/s12942-021-00267-z
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author Buller, Ian D.
Brown, Derek W.
Myers, Timothy A.
Jones, Rena R.
Machiela, Mitchell J.
author_facet Buller, Ian D.
Brown, Derek W.
Myers, Timothy A.
Jones, Rena R.
Machiela, Mitchell J.
author_sort Buller, Ian D.
collection PubMed
description BACKGROUND: Cancer epidemiology studies require sufficient power to assess spatial relationships between exposures and cancer incidence accurately. However, methods for power calculations of spatial statistics are complicated and underdeveloped, and therefore underutilized by investigators. The spatial relative risk function, a cluster detection technique that detects spatial clusters of point-level data for two groups (e.g., cancer cases and controls, two exposure groups), is a commonly used spatial statistic but does not have a readily available power calculation for study design. RESULTS: We developed sparrpowR as an open-source R package to estimate the statistical power of the spatial relative risk function. sparrpowR generates simulated data applying user-defined parameters (e.g., sample size, locations) to detect spatial clusters with high statistical power. We present applications of sparrpowR that perform a power calculation for a study designed to detect a spatial cluster of incident cancer in relation to a point source of numerous environmental emissions. The conducted power calculations demonstrate the functionality and utility of sparrpowR to calculate the local power for spatial cluster detection. CONCLUSIONS: sparrpowR improves the current capacity of investigators to calculate the statistical power of spatial clusters, which assists in designing more efficient studies. This newly developed R package addresses a critically underdeveloped gap in cancer epidemiology by estimating statistical power for a common spatial cluster detection technique.
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spelling pubmed-79771782021-03-22 sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application Buller, Ian D. Brown, Derek W. Myers, Timothy A. Jones, Rena R. Machiela, Mitchell J. Int J Health Geogr Methodology BACKGROUND: Cancer epidemiology studies require sufficient power to assess spatial relationships between exposures and cancer incidence accurately. However, methods for power calculations of spatial statistics are complicated and underdeveloped, and therefore underutilized by investigators. The spatial relative risk function, a cluster detection technique that detects spatial clusters of point-level data for two groups (e.g., cancer cases and controls, two exposure groups), is a commonly used spatial statistic but does not have a readily available power calculation for study design. RESULTS: We developed sparrpowR as an open-source R package to estimate the statistical power of the spatial relative risk function. sparrpowR generates simulated data applying user-defined parameters (e.g., sample size, locations) to detect spatial clusters with high statistical power. We present applications of sparrpowR that perform a power calculation for a study designed to detect a spatial cluster of incident cancer in relation to a point source of numerous environmental emissions. The conducted power calculations demonstrate the functionality and utility of sparrpowR to calculate the local power for spatial cluster detection. CONCLUSIONS: sparrpowR improves the current capacity of investigators to calculate the statistical power of spatial clusters, which assists in designing more efficient studies. This newly developed R package addresses a critically underdeveloped gap in cancer epidemiology by estimating statistical power for a common spatial cluster detection technique. BioMed Central 2021-03-18 /pmc/articles/PMC7977178/ /pubmed/33736677 http://dx.doi.org/10.1186/s12942-021-00267-z Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Methodology
Buller, Ian D.
Brown, Derek W.
Myers, Timothy A.
Jones, Rena R.
Machiela, Mitchell J.
sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application
title sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application
title_full sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application
title_fullStr sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application
title_full_unstemmed sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application
title_short sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application
title_sort sparrpowr: a flexible r package to estimate statistical power to identify spatial clustering of two groups and its application
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7977178/
https://www.ncbi.nlm.nih.gov/pubmed/33736677
http://dx.doi.org/10.1186/s12942-021-00267-z
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