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Federated learning for COVID-19 screening from Chest X-ray images

Today, the whole world is facing a great medical disaster that affects the health and lives of the people: the COVID-19 disease, colloquially known as the Corona virus. Deep learning is an effective means to assist radiologists to analyze the vast amount of chest X-ray images, which can potentially...

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Autores principales: Feki, Ines, Ammar, Sourour, Kessentini, Yousri, Muhammad, Khan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7979273/
https://www.ncbi.nlm.nih.gov/pubmed/33776607
http://dx.doi.org/10.1016/j.asoc.2021.107330
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author Feki, Ines
Ammar, Sourour
Kessentini, Yousri
Muhammad, Khan
author_facet Feki, Ines
Ammar, Sourour
Kessentini, Yousri
Muhammad, Khan
author_sort Feki, Ines
collection PubMed
description Today, the whole world is facing a great medical disaster that affects the health and lives of the people: the COVID-19 disease, colloquially known as the Corona virus. Deep learning is an effective means to assist radiologists to analyze the vast amount of chest X-ray images, which can potentially have a substantial role in streamlining and accelerating the diagnosis of COVID-19. Such techniques involve large datasets for training and all such data must be centralized in order to be processed. Due to medical data privacy regulations, it is often not possible to collect and share patient data in a centralized data server. In this work, we present a collaborative federated learning framework allowing multiple medical institutions screening COVID-19 from Chest X-ray images using deep learning without sharing patient data. We investigate several key properties and specificities of federated learning setting including the not independent and identically distributed (non-IID) and unbalanced data distributions that naturally arise. We experimentally demonstrate that the proposed federated learning framework provides competitive results to that of models trained by sharing data, considering two different model architectures. These findings would encourage medical institutions to adopt collaborative process and reap benefits of the rich private data in order to rapidly build a powerful model for COVID-19 screening.
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spelling pubmed-79792732021-03-23 Federated learning for COVID-19 screening from Chest X-ray images Feki, Ines Ammar, Sourour Kessentini, Yousri Muhammad, Khan Appl Soft Comput Article Today, the whole world is facing a great medical disaster that affects the health and lives of the people: the COVID-19 disease, colloquially known as the Corona virus. Deep learning is an effective means to assist radiologists to analyze the vast amount of chest X-ray images, which can potentially have a substantial role in streamlining and accelerating the diagnosis of COVID-19. Such techniques involve large datasets for training and all such data must be centralized in order to be processed. Due to medical data privacy regulations, it is often not possible to collect and share patient data in a centralized data server. In this work, we present a collaborative federated learning framework allowing multiple medical institutions screening COVID-19 from Chest X-ray images using deep learning without sharing patient data. We investigate several key properties and specificities of federated learning setting including the not independent and identically distributed (non-IID) and unbalanced data distributions that naturally arise. We experimentally demonstrate that the proposed federated learning framework provides competitive results to that of models trained by sharing data, considering two different model architectures. These findings would encourage medical institutions to adopt collaborative process and reap benefits of the rich private data in order to rapidly build a powerful model for COVID-19 screening. Elsevier B.V. 2021-07 2021-03-20 /pmc/articles/PMC7979273/ /pubmed/33776607 http://dx.doi.org/10.1016/j.asoc.2021.107330 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Feki, Ines
Ammar, Sourour
Kessentini, Yousri
Muhammad, Khan
Federated learning for COVID-19 screening from Chest X-ray images
title Federated learning for COVID-19 screening from Chest X-ray images
title_full Federated learning for COVID-19 screening from Chest X-ray images
title_fullStr Federated learning for COVID-19 screening from Chest X-ray images
title_full_unstemmed Federated learning for COVID-19 screening from Chest X-ray images
title_short Federated learning for COVID-19 screening from Chest X-ray images
title_sort federated learning for covid-19 screening from chest x-ray images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7979273/
https://www.ncbi.nlm.nih.gov/pubmed/33776607
http://dx.doi.org/10.1016/j.asoc.2021.107330
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