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Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients

OBJECTIVE: Endometrial cancer (EC) is one of the most common gynecologic malignancies. The present study aims to identify a metabolism-related biosignature for EC and explore the molecular immune-related mechanisms underlying the tumorigenesis of EC. METHODS: Transcriptomics and clinical data of EC...

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Autores principales: Fan, Yuan, Li, Xingchen, Tian, Li, Wang, Jianliu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7982602/
https://www.ncbi.nlm.nih.gov/pubmed/33763366
http://dx.doi.org/10.3389/fonc.2021.630905
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author Fan, Yuan
Li, Xingchen
Tian, Li
Wang, Jianliu
author_facet Fan, Yuan
Li, Xingchen
Tian, Li
Wang, Jianliu
author_sort Fan, Yuan
collection PubMed
description OBJECTIVE: Endometrial cancer (EC) is one of the most common gynecologic malignancies. The present study aims to identify a metabolism-related biosignature for EC and explore the molecular immune-related mechanisms underlying the tumorigenesis of EC. METHODS: Transcriptomics and clinical data of EC were retrieved from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. Common differentially expressed metabolism-related genes were extracted and a risk signature was identified by using the least absolute shrinkage and selection operator (LASSO) regression analysis method. A nomogram integrating the prognostic model and the clinicopathological characteristics was established and validated by a cohort of clinical EC patients. Furthermore, the immune and stromal scores were observed and the infiltration of immune cells in EC cells was analyzed. RESULTS: Six genes, including CA3, HNMT, PHGDH, CD38, PSAT1, and GPI, were selected for the development of the risk prediction model. The Kaplan-Meier curve indicated that patients in the low-risk group had considerably better overall survival (OS) (P = 7.874e-05). Then a nomogram was constructed and could accurately predict the OS (AUC = 0.827, 0.821, 0.845 at 3-, 5-, and 7-year of OS). External validation with clinical patients showed that patients with low risk scores had a longer OS (p = 0.04). Immune/stromal scores and infiltrating density of six types of immune cells were lower in high-risk group. CONCLUSIONS: In summary, our work provided six potential metabolism-related biomarkers as well as a nomogram for the prognosis of EC patients, and explored the underlying mechanism involved in the progression of EC.
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spelling pubmed-79826022021-03-23 Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients Fan, Yuan Li, Xingchen Tian, Li Wang, Jianliu Front Oncol Oncology OBJECTIVE: Endometrial cancer (EC) is one of the most common gynecologic malignancies. The present study aims to identify a metabolism-related biosignature for EC and explore the molecular immune-related mechanisms underlying the tumorigenesis of EC. METHODS: Transcriptomics and clinical data of EC were retrieved from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. Common differentially expressed metabolism-related genes were extracted and a risk signature was identified by using the least absolute shrinkage and selection operator (LASSO) regression analysis method. A nomogram integrating the prognostic model and the clinicopathological characteristics was established and validated by a cohort of clinical EC patients. Furthermore, the immune and stromal scores were observed and the infiltration of immune cells in EC cells was analyzed. RESULTS: Six genes, including CA3, HNMT, PHGDH, CD38, PSAT1, and GPI, were selected for the development of the risk prediction model. The Kaplan-Meier curve indicated that patients in the low-risk group had considerably better overall survival (OS) (P = 7.874e-05). Then a nomogram was constructed and could accurately predict the OS (AUC = 0.827, 0.821, 0.845 at 3-, 5-, and 7-year of OS). External validation with clinical patients showed that patients with low risk scores had a longer OS (p = 0.04). Immune/stromal scores and infiltrating density of six types of immune cells were lower in high-risk group. CONCLUSIONS: In summary, our work provided six potential metabolism-related biomarkers as well as a nomogram for the prognosis of EC patients, and explored the underlying mechanism involved in the progression of EC. Frontiers Media S.A. 2021-03-08 /pmc/articles/PMC7982602/ /pubmed/33763366 http://dx.doi.org/10.3389/fonc.2021.630905 Text en Copyright © 2021 Fan, Li, Tian and Wang http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Fan, Yuan
Li, Xingchen
Tian, Li
Wang, Jianliu
Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients
title Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients
title_full Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients
title_fullStr Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients
title_full_unstemmed Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients
title_short Identification of a Metabolism-Related Signature for the Prediction of Survival in Endometrial Cancer Patients
title_sort identification of a metabolism-related signature for the prediction of survival in endometrial cancer patients
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7982602/
https://www.ncbi.nlm.nih.gov/pubmed/33763366
http://dx.doi.org/10.3389/fonc.2021.630905
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