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Robust brain network identification from multi-subject asynchronous fMRI data
We describe a novel method for robust identification of common brain networks and their corresponding temporal dynamics across subjects from asynchronous functional MRI (fMRI) using tensor decomposition. We first temporally align asynchronous fMRI data using the orthogonal BrainSync transform, allow...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7983296/ https://www.ncbi.nlm.nih.gov/pubmed/33301936 http://dx.doi.org/10.1016/j.neuroimage.2020.117615 |
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author | Li, Jian Wisnowski, Jessica L. Joshi, Anand A. Leahy, Richard M. |
author_facet | Li, Jian Wisnowski, Jessica L. Joshi, Anand A. Leahy, Richard M. |
author_sort | Li, Jian |
collection | PubMed |
description | We describe a novel method for robust identification of common brain networks and their corresponding temporal dynamics across subjects from asynchronous functional MRI (fMRI) using tensor decomposition. We first temporally align asynchronous fMRI data using the orthogonal BrainSync transform, allowing us to study common brain networks across sessions and subjects. We then map the synchronized fMRI data into a 3D tensor (vertices × time × subject/session). Finally, we apply Nesterov-accelerated adaptive moment estimation (Nadam) within a scalable and robust sequential Canonical Polyadic (CP) decomposition framework to identify a low rank tensor approximation to the data. As a result of CP tensor decomposition, we successfully identified twelve known brain networks with their corresponding temporal dynamics from 40 subjects using the Human Connectome Project’s language task fMRI data without any prior information regarding the specific task designs. Seven of these networks show distinct subjects’ responses to the language task with differing temporal dynamics; two show sub-components of the default mode network that exhibit deactivation during the tasks; the remaining three components reflect non-task-related activities. We compare results to those found using group independent component analysis (ICA) and canonical ICA. Bootstrap analysis demonstrates increased robustness of networks found using the CP tensor approach relative to ICA-based methods. |
format | Online Article Text |
id | pubmed-7983296 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
record_format | MEDLINE/PubMed |
spelling | pubmed-79832962021-03-22 Robust brain network identification from multi-subject asynchronous fMRI data Li, Jian Wisnowski, Jessica L. Joshi, Anand A. Leahy, Richard M. Neuroimage Article We describe a novel method for robust identification of common brain networks and their corresponding temporal dynamics across subjects from asynchronous functional MRI (fMRI) using tensor decomposition. We first temporally align asynchronous fMRI data using the orthogonal BrainSync transform, allowing us to study common brain networks across sessions and subjects. We then map the synchronized fMRI data into a 3D tensor (vertices × time × subject/session). Finally, we apply Nesterov-accelerated adaptive moment estimation (Nadam) within a scalable and robust sequential Canonical Polyadic (CP) decomposition framework to identify a low rank tensor approximation to the data. As a result of CP tensor decomposition, we successfully identified twelve known brain networks with their corresponding temporal dynamics from 40 subjects using the Human Connectome Project’s language task fMRI data without any prior information regarding the specific task designs. Seven of these networks show distinct subjects’ responses to the language task with differing temporal dynamics; two show sub-components of the default mode network that exhibit deactivation during the tasks; the remaining three components reflect non-task-related activities. We compare results to those found using group independent component analysis (ICA) and canonical ICA. Bootstrap analysis demonstrates increased robustness of networks found using the CP tensor approach relative to ICA-based methods. 2020-12-08 2021-02-15 /pmc/articles/PMC7983296/ /pubmed/33301936 http://dx.doi.org/10.1016/j.neuroimage.2020.117615 Text en This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/) |
spellingShingle | Article Li, Jian Wisnowski, Jessica L. Joshi, Anand A. Leahy, Richard M. Robust brain network identification from multi-subject asynchronous fMRI data |
title | Robust brain network identification from multi-subject asynchronous fMRI data |
title_full | Robust brain network identification from multi-subject asynchronous fMRI data |
title_fullStr | Robust brain network identification from multi-subject asynchronous fMRI data |
title_full_unstemmed | Robust brain network identification from multi-subject asynchronous fMRI data |
title_short | Robust brain network identification from multi-subject asynchronous fMRI data |
title_sort | robust brain network identification from multi-subject asynchronous fmri data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7983296/ https://www.ncbi.nlm.nih.gov/pubmed/33301936 http://dx.doi.org/10.1016/j.neuroimage.2020.117615 |
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