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ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p

Glioblastoma accounts for 45.2% of central nervous system tumors. Despite the availability of multiple treatments (e.g., surgery, radiotherapy, chemotherapy, biological therapy, immunotherapy, and electric field therapy), glioblastoma has a poor prognosis, with a 5-year survival rate of approximatel...

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Autores principales: Luo, Xiaobin, Tu, Tianqi, Zhong, Yali, Xu, Shangyi, Chen, Xiangzhou, Chen, Ligang, Yang, Fubing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7985093/
https://www.ncbi.nlm.nih.gov/pubmed/33767729
http://dx.doi.org/10.3389/fgene.2021.617350
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author Luo, Xiaobin
Tu, Tianqi
Zhong, Yali
Xu, Shangyi
Chen, Xiangzhou
Chen, Ligang
Yang, Fubing
author_facet Luo, Xiaobin
Tu, Tianqi
Zhong, Yali
Xu, Shangyi
Chen, Xiangzhou
Chen, Ligang
Yang, Fubing
author_sort Luo, Xiaobin
collection PubMed
description Glioblastoma accounts for 45.2% of central nervous system tumors. Despite the availability of multiple treatments (e.g., surgery, radiotherapy, chemotherapy, biological therapy, immunotherapy, and electric field therapy), glioblastoma has a poor prognosis, with a 5-year survival rate of approximately 5%. The pathogenesis and prognostic markers of this cancer are currently unclear. To this end, this study aimed to explore the pathogenesis of glioblastoma and identify potential prognostic markers. We used data from the GEO and TCGA databases and identified five genes (ITGA5, MMP9, PTPRN, PTX3, and STX1A) that could affect the survival rate of glioblastoma patients and that were differentially expressed between glioblastoma patients and non-tumors groups. Based on a variety of bioinformatics tools for reverse prediction of target genes associated with the prognosis of GBM, a ceRNA network of messenger RNA (STX1A, PTX3, MMP9)-microRNA (miR-9-5p)-long non-coding RNA (CRNDE) was constructed. Finally, we identified five potential therapeutic drugs (bacitracin, hecogenin, clemizole, chrysin, and gibberellic acid) that may be effective treatments for glioblastoma.
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spelling pubmed-79850932021-03-24 ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p Luo, Xiaobin Tu, Tianqi Zhong, Yali Xu, Shangyi Chen, Xiangzhou Chen, Ligang Yang, Fubing Front Genet Genetics Glioblastoma accounts for 45.2% of central nervous system tumors. Despite the availability of multiple treatments (e.g., surgery, radiotherapy, chemotherapy, biological therapy, immunotherapy, and electric field therapy), glioblastoma has a poor prognosis, with a 5-year survival rate of approximately 5%. The pathogenesis and prognostic markers of this cancer are currently unclear. To this end, this study aimed to explore the pathogenesis of glioblastoma and identify potential prognostic markers. We used data from the GEO and TCGA databases and identified five genes (ITGA5, MMP9, PTPRN, PTX3, and STX1A) that could affect the survival rate of glioblastoma patients and that were differentially expressed between glioblastoma patients and non-tumors groups. Based on a variety of bioinformatics tools for reverse prediction of target genes associated with the prognosis of GBM, a ceRNA network of messenger RNA (STX1A, PTX3, MMP9)-microRNA (miR-9-5p)-long non-coding RNA (CRNDE) was constructed. Finally, we identified five potential therapeutic drugs (bacitracin, hecogenin, clemizole, chrysin, and gibberellic acid) that may be effective treatments for glioblastoma. Frontiers Media S.A. 2021-03-09 /pmc/articles/PMC7985093/ /pubmed/33767729 http://dx.doi.org/10.3389/fgene.2021.617350 Text en Copyright © 2021 Luo, Tu, Zhong, Xu, Chen, Chen and Yang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Luo, Xiaobin
Tu, Tianqi
Zhong, Yali
Xu, Shangyi
Chen, Xiangzhou
Chen, Ligang
Yang, Fubing
ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p
title ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p
title_full ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p
title_fullStr ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p
title_full_unstemmed ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p
title_short ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p
title_sort cerna network analysis shows that lncrna crnde promotes progression of glioblastoma through sponge mir-9-5p
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7985093/
https://www.ncbi.nlm.nih.gov/pubmed/33767729
http://dx.doi.org/10.3389/fgene.2021.617350
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