Cargando…
ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p
Glioblastoma accounts for 45.2% of central nervous system tumors. Despite the availability of multiple treatments (e.g., surgery, radiotherapy, chemotherapy, biological therapy, immunotherapy, and electric field therapy), glioblastoma has a poor prognosis, with a 5-year survival rate of approximatel...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7985093/ https://www.ncbi.nlm.nih.gov/pubmed/33767729 http://dx.doi.org/10.3389/fgene.2021.617350 |
_version_ | 1783668169168125952 |
---|---|
author | Luo, Xiaobin Tu, Tianqi Zhong, Yali Xu, Shangyi Chen, Xiangzhou Chen, Ligang Yang, Fubing |
author_facet | Luo, Xiaobin Tu, Tianqi Zhong, Yali Xu, Shangyi Chen, Xiangzhou Chen, Ligang Yang, Fubing |
author_sort | Luo, Xiaobin |
collection | PubMed |
description | Glioblastoma accounts for 45.2% of central nervous system tumors. Despite the availability of multiple treatments (e.g., surgery, radiotherapy, chemotherapy, biological therapy, immunotherapy, and electric field therapy), glioblastoma has a poor prognosis, with a 5-year survival rate of approximately 5%. The pathogenesis and prognostic markers of this cancer are currently unclear. To this end, this study aimed to explore the pathogenesis of glioblastoma and identify potential prognostic markers. We used data from the GEO and TCGA databases and identified five genes (ITGA5, MMP9, PTPRN, PTX3, and STX1A) that could affect the survival rate of glioblastoma patients and that were differentially expressed between glioblastoma patients and non-tumors groups. Based on a variety of bioinformatics tools for reverse prediction of target genes associated with the prognosis of GBM, a ceRNA network of messenger RNA (STX1A, PTX3, MMP9)-microRNA (miR-9-5p)-long non-coding RNA (CRNDE) was constructed. Finally, we identified five potential therapeutic drugs (bacitracin, hecogenin, clemizole, chrysin, and gibberellic acid) that may be effective treatments for glioblastoma. |
format | Online Article Text |
id | pubmed-7985093 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79850932021-03-24 ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p Luo, Xiaobin Tu, Tianqi Zhong, Yali Xu, Shangyi Chen, Xiangzhou Chen, Ligang Yang, Fubing Front Genet Genetics Glioblastoma accounts for 45.2% of central nervous system tumors. Despite the availability of multiple treatments (e.g., surgery, radiotherapy, chemotherapy, biological therapy, immunotherapy, and electric field therapy), glioblastoma has a poor prognosis, with a 5-year survival rate of approximately 5%. The pathogenesis and prognostic markers of this cancer are currently unclear. To this end, this study aimed to explore the pathogenesis of glioblastoma and identify potential prognostic markers. We used data from the GEO and TCGA databases and identified five genes (ITGA5, MMP9, PTPRN, PTX3, and STX1A) that could affect the survival rate of glioblastoma patients and that were differentially expressed between glioblastoma patients and non-tumors groups. Based on a variety of bioinformatics tools for reverse prediction of target genes associated with the prognosis of GBM, a ceRNA network of messenger RNA (STX1A, PTX3, MMP9)-microRNA (miR-9-5p)-long non-coding RNA (CRNDE) was constructed. Finally, we identified five potential therapeutic drugs (bacitracin, hecogenin, clemizole, chrysin, and gibberellic acid) that may be effective treatments for glioblastoma. Frontiers Media S.A. 2021-03-09 /pmc/articles/PMC7985093/ /pubmed/33767729 http://dx.doi.org/10.3389/fgene.2021.617350 Text en Copyright © 2021 Luo, Tu, Zhong, Xu, Chen, Chen and Yang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Luo, Xiaobin Tu, Tianqi Zhong, Yali Xu, Shangyi Chen, Xiangzhou Chen, Ligang Yang, Fubing ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p |
title | ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p |
title_full | ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p |
title_fullStr | ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p |
title_full_unstemmed | ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p |
title_short | ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p |
title_sort | cerna network analysis shows that lncrna crnde promotes progression of glioblastoma through sponge mir-9-5p |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7985093/ https://www.ncbi.nlm.nih.gov/pubmed/33767729 http://dx.doi.org/10.3389/fgene.2021.617350 |
work_keys_str_mv | AT luoxiaobin cernanetworkanalysisshowsthatlncrnacrndepromotesprogressionofglioblastomathroughspongemir95p AT tutianqi cernanetworkanalysisshowsthatlncrnacrndepromotesprogressionofglioblastomathroughspongemir95p AT zhongyali cernanetworkanalysisshowsthatlncrnacrndepromotesprogressionofglioblastomathroughspongemir95p AT xushangyi cernanetworkanalysisshowsthatlncrnacrndepromotesprogressionofglioblastomathroughspongemir95p AT chenxiangzhou cernanetworkanalysisshowsthatlncrnacrndepromotesprogressionofglioblastomathroughspongemir95p AT chenligang cernanetworkanalysisshowsthatlncrnacrndepromotesprogressionofglioblastomathroughspongemir95p AT yangfubing cernanetworkanalysisshowsthatlncrnacrndepromotesprogressionofglioblastomathroughspongemir95p |