Cargando…

Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9

As part of an International consortium aiming at the characterization by NMR of the proteins of the SARS-CoV-2 virus, we have obtained the virtually complete assignment of the backbone atoms of the non-structural protein nsp9. This small (12 kDa) protein is encoded by ORF1a, binds to RNA and seems t...

Descripción completa

Detalles Bibliográficos
Autores principales: F. Dudás, Erika, Puglisi, Rita, Korn, Sophie Marianne, Alfano, Caterina, Bellone, Maria Laura, Piaz, Fabrizio Dal, Kelly, Geoff, Monaca, Elisa, Schlundt, Andreas, Schwalbe, Harald, Pastore, Annalisa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7985572/
https://www.ncbi.nlm.nih.gov/pubmed/33755914
http://dx.doi.org/10.1007/s12104-021-10011-0
_version_ 1783668276704837632
author F. Dudás, Erika
Puglisi, Rita
Korn, Sophie Marianne
Alfano, Caterina
Bellone, Maria Laura
Piaz, Fabrizio Dal
Kelly, Geoff
Monaca, Elisa
Schlundt, Andreas
Schwalbe, Harald
Pastore, Annalisa
author_facet F. Dudás, Erika
Puglisi, Rita
Korn, Sophie Marianne
Alfano, Caterina
Bellone, Maria Laura
Piaz, Fabrizio Dal
Kelly, Geoff
Monaca, Elisa
Schlundt, Andreas
Schwalbe, Harald
Pastore, Annalisa
author_sort F. Dudás, Erika
collection PubMed
description As part of an International consortium aiming at the characterization by NMR of the proteins of the SARS-CoV-2 virus, we have obtained the virtually complete assignment of the backbone atoms of the non-structural protein nsp9. This small (12 kDa) protein is encoded by ORF1a, binds to RNA and seems to be essential for viral RNA synthesis. The crystal structures of the SARS-CoV-2 protein and other homologues suggest that the protein is dimeric as also confirmed by analytical ultracentrifugation and dynamic light scattering. Our data constitute the prerequisite for further NMR-based characterization, and provide the starting point for the identification of small molecule lead compounds that could interfere with RNA binding and prevent viral replication.
format Online
Article
Text
id pubmed-7985572
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer Netherlands
record_format MEDLINE/PubMed
spelling pubmed-79855722021-03-23 Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9 F. Dudás, Erika Puglisi, Rita Korn, Sophie Marianne Alfano, Caterina Bellone, Maria Laura Piaz, Fabrizio Dal Kelly, Geoff Monaca, Elisa Schlundt, Andreas Schwalbe, Harald Pastore, Annalisa Biomol NMR Assign Article As part of an International consortium aiming at the characterization by NMR of the proteins of the SARS-CoV-2 virus, we have obtained the virtually complete assignment of the backbone atoms of the non-structural protein nsp9. This small (12 kDa) protein is encoded by ORF1a, binds to RNA and seems to be essential for viral RNA synthesis. The crystal structures of the SARS-CoV-2 protein and other homologues suggest that the protein is dimeric as also confirmed by analytical ultracentrifugation and dynamic light scattering. Our data constitute the prerequisite for further NMR-based characterization, and provide the starting point for the identification of small molecule lead compounds that could interfere with RNA binding and prevent viral replication. Springer Netherlands 2021-03-23 2021 /pmc/articles/PMC7985572/ /pubmed/33755914 http://dx.doi.org/10.1007/s12104-021-10011-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
F. Dudás, Erika
Puglisi, Rita
Korn, Sophie Marianne
Alfano, Caterina
Bellone, Maria Laura
Piaz, Fabrizio Dal
Kelly, Geoff
Monaca, Elisa
Schlundt, Andreas
Schwalbe, Harald
Pastore, Annalisa
Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9
title Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9
title_full Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9
title_fullStr Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9
title_full_unstemmed Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9
title_short Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9
title_sort backbone chemical shift spectral assignments of sars coronavirus-2 non-structural protein nsp9
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7985572/
https://www.ncbi.nlm.nih.gov/pubmed/33755914
http://dx.doi.org/10.1007/s12104-021-10011-0
work_keys_str_mv AT fdudaserika backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT puglisirita backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT kornsophiemarianne backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT alfanocaterina backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT bellonemarialaura backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT piazfabriziodal backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT kellygeoff backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT monacaelisa backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT schlundtandreas backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT schwalbeharald backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9
AT pastoreannalisa backbonechemicalshiftspectralassignmentsofsarscoronavirus2nonstructuralproteinnsp9