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Long-term stabilization of DNA at room temperature using a one-step microwave assisted process

Long-term stabilization of DNA is needed for forensic, clinical, in-field operations and numerous other applications. Although freezing (<−20 °C) and dry storage are currently the preferential methods for long-term storage, a noticeable pre-analytical degradation of DNA over time, upfront capital...

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Autores principales: Narvaez Villarrubia, Claudia W., Tumas, Keyla C., Chauhan, Rajat, MacDonald, Thomas, Dattelbaum, Andrew M., Omberg, Kristin, Gupta, Gautam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7986179/
https://www.ncbi.nlm.nih.gov/pubmed/33778372
http://dx.doi.org/10.1007/s42247-021-00208-3
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author Narvaez Villarrubia, Claudia W.
Tumas, Keyla C.
Chauhan, Rajat
MacDonald, Thomas
Dattelbaum, Andrew M.
Omberg, Kristin
Gupta, Gautam
author_facet Narvaez Villarrubia, Claudia W.
Tumas, Keyla C.
Chauhan, Rajat
MacDonald, Thomas
Dattelbaum, Andrew M.
Omberg, Kristin
Gupta, Gautam
author_sort Narvaez Villarrubia, Claudia W.
collection PubMed
description Long-term stabilization of DNA is needed for forensic, clinical, in-field operations and numerous other applications. Although freezing (<−20 °C) and dry storage are currently the preferential methods for long-term storage, a noticeable pre-analytical degradation of DNA over time, upfront capital investment and recurring costs have demonstrated a need for an alternative long-term room-temperature preservation method. Herein, we report a novel, fast (~5 min) silica sol–gel preparation method using a standard microwave-initiated polymerization reaction amenable to stabilization of DNA. The method involves use of one chemical, tetramethoxy silane (TMOS) and eliminates the use of alcohol as co-solvent and catalysts such as acids. In addition, the process involves minimal technical expertise, thus making it an ideal choice for resource-challenged countries and in-field applications. The sol–gel is capable to store and stabilize Escherichia coli DNA in ambient conditions for 210 days. DNA recovered from the sol–gel showed no significant nucleolytic and/or oxidative degradation, outperforming conventional storage conditions at −20 °C, and reported state-of-the-art technology. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s42247-021-00208-3.
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spelling pubmed-79861792021-03-24 Long-term stabilization of DNA at room temperature using a one-step microwave assisted process Narvaez Villarrubia, Claudia W. Tumas, Keyla C. Chauhan, Rajat MacDonald, Thomas Dattelbaum, Andrew M. Omberg, Kristin Gupta, Gautam Emergent Mater Original Article Long-term stabilization of DNA is needed for forensic, clinical, in-field operations and numerous other applications. Although freezing (<−20 °C) and dry storage are currently the preferential methods for long-term storage, a noticeable pre-analytical degradation of DNA over time, upfront capital investment and recurring costs have demonstrated a need for an alternative long-term room-temperature preservation method. Herein, we report a novel, fast (~5 min) silica sol–gel preparation method using a standard microwave-initiated polymerization reaction amenable to stabilization of DNA. The method involves use of one chemical, tetramethoxy silane (TMOS) and eliminates the use of alcohol as co-solvent and catalysts such as acids. In addition, the process involves minimal technical expertise, thus making it an ideal choice for resource-challenged countries and in-field applications. The sol–gel is capable to store and stabilize Escherichia coli DNA in ambient conditions for 210 days. DNA recovered from the sol–gel showed no significant nucleolytic and/or oxidative degradation, outperforming conventional storage conditions at −20 °C, and reported state-of-the-art technology. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s42247-021-00208-3. Springer International Publishing 2021-03-23 2022 /pmc/articles/PMC7986179/ /pubmed/33778372 http://dx.doi.org/10.1007/s42247-021-00208-3 Text en © Qatar University and Springer Nature Switzerland AG 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Narvaez Villarrubia, Claudia W.
Tumas, Keyla C.
Chauhan, Rajat
MacDonald, Thomas
Dattelbaum, Andrew M.
Omberg, Kristin
Gupta, Gautam
Long-term stabilization of DNA at room temperature using a one-step microwave assisted process
title Long-term stabilization of DNA at room temperature using a one-step microwave assisted process
title_full Long-term stabilization of DNA at room temperature using a one-step microwave assisted process
title_fullStr Long-term stabilization of DNA at room temperature using a one-step microwave assisted process
title_full_unstemmed Long-term stabilization of DNA at room temperature using a one-step microwave assisted process
title_short Long-term stabilization of DNA at room temperature using a one-step microwave assisted process
title_sort long-term stabilization of dna at room temperature using a one-step microwave assisted process
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7986179/
https://www.ncbi.nlm.nih.gov/pubmed/33778372
http://dx.doi.org/10.1007/s42247-021-00208-3
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