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AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles

[Image: see text] The synthesis quality of artificial inorganic nanocrystals is most often assessed by transmission electron microscopy (TEM) for which high-throughput advances have dramatically increased both the quantity and information richness of metal nanoparticle (mNP) characterization. Existi...

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Autores principales: Wang, Xingzhi, Li, Jie, Ha, Hyun Dong, Dahl, Jakob C., Ondry, Justin C., Moreno-Hernandez, Ivan, Head-Gordon, Teresa, Alivisatos, A. Paul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7988451/
https://www.ncbi.nlm.nih.gov/pubmed/33778811
http://dx.doi.org/10.1021/jacsau.0c00030
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author Wang, Xingzhi
Li, Jie
Ha, Hyun Dong
Dahl, Jakob C.
Ondry, Justin C.
Moreno-Hernandez, Ivan
Head-Gordon, Teresa
Alivisatos, A. Paul
author_facet Wang, Xingzhi
Li, Jie
Ha, Hyun Dong
Dahl, Jakob C.
Ondry, Justin C.
Moreno-Hernandez, Ivan
Head-Gordon, Teresa
Alivisatos, A. Paul
author_sort Wang, Xingzhi
collection PubMed
description [Image: see text] The synthesis quality of artificial inorganic nanocrystals is most often assessed by transmission electron microscopy (TEM) for which high-throughput advances have dramatically increased both the quantity and information richness of metal nanoparticle (mNP) characterization. Existing automated data analysis algorithms of TEM mNP images generally adopt a supervised approach, requiring a significant effort in human preparation of labeled data that reduces objectivity, efficiency, and generalizability. We have developed an unsupervised algorithm AutoDetect-mNP for automated analysis of TEM images that objectively extracts morphological information on convex mNPs from TEM images based on their shape attributes, requiring little to no human input in the process. The performance of AutoDetect-mNP is tested on two data sets of bright field TEM images of Au nanoparticles with different shapes and further extended to palladium nanocubes and cadmium selenide quantum dots, demonstrating that the algorithm is quantitatively reliable and can thus serve as a generalizable measure of the morphology distributions of any mNP synthesis. The AutoDetect-mNP algorithm will aid in future developments of high-throughput characterization of mNPs and the future advent of time-resolved TEM studies that can investigate reaction mechanisms of mNP synthesis and reactivity.
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spelling pubmed-79884512021-03-25 AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles Wang, Xingzhi Li, Jie Ha, Hyun Dong Dahl, Jakob C. Ondry, Justin C. Moreno-Hernandez, Ivan Head-Gordon, Teresa Alivisatos, A. Paul JACS Au [Image: see text] The synthesis quality of artificial inorganic nanocrystals is most often assessed by transmission electron microscopy (TEM) for which high-throughput advances have dramatically increased both the quantity and information richness of metal nanoparticle (mNP) characterization. Existing automated data analysis algorithms of TEM mNP images generally adopt a supervised approach, requiring a significant effort in human preparation of labeled data that reduces objectivity, efficiency, and generalizability. We have developed an unsupervised algorithm AutoDetect-mNP for automated analysis of TEM images that objectively extracts morphological information on convex mNPs from TEM images based on their shape attributes, requiring little to no human input in the process. The performance of AutoDetect-mNP is tested on two data sets of bright field TEM images of Au nanoparticles with different shapes and further extended to palladium nanocubes and cadmium selenide quantum dots, demonstrating that the algorithm is quantitatively reliable and can thus serve as a generalizable measure of the morphology distributions of any mNP synthesis. The AutoDetect-mNP algorithm will aid in future developments of high-throughput characterization of mNPs and the future advent of time-resolved TEM studies that can investigate reaction mechanisms of mNP synthesis and reactivity. American Chemical Society 2021-02-25 /pmc/articles/PMC7988451/ /pubmed/33778811 http://dx.doi.org/10.1021/jacsau.0c00030 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Wang, Xingzhi
Li, Jie
Ha, Hyun Dong
Dahl, Jakob C.
Ondry, Justin C.
Moreno-Hernandez, Ivan
Head-Gordon, Teresa
Alivisatos, A. Paul
AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles
title AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles
title_full AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles
title_fullStr AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles
title_full_unstemmed AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles
title_short AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles
title_sort autodetect-mnp: an unsupervised machine learning algorithm for automated analysis of transmission electron microscope images of metal nanoparticles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7988451/
https://www.ncbi.nlm.nih.gov/pubmed/33778811
http://dx.doi.org/10.1021/jacsau.0c00030
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