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AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles
[Image: see text] The synthesis quality of artificial inorganic nanocrystals is most often assessed by transmission electron microscopy (TEM) for which high-throughput advances have dramatically increased both the quantity and information richness of metal nanoparticle (mNP) characterization. Existi...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7988451/ https://www.ncbi.nlm.nih.gov/pubmed/33778811 http://dx.doi.org/10.1021/jacsau.0c00030 |
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author | Wang, Xingzhi Li, Jie Ha, Hyun Dong Dahl, Jakob C. Ondry, Justin C. Moreno-Hernandez, Ivan Head-Gordon, Teresa Alivisatos, A. Paul |
author_facet | Wang, Xingzhi Li, Jie Ha, Hyun Dong Dahl, Jakob C. Ondry, Justin C. Moreno-Hernandez, Ivan Head-Gordon, Teresa Alivisatos, A. Paul |
author_sort | Wang, Xingzhi |
collection | PubMed |
description | [Image: see text] The synthesis quality of artificial inorganic nanocrystals is most often assessed by transmission electron microscopy (TEM) for which high-throughput advances have dramatically increased both the quantity and information richness of metal nanoparticle (mNP) characterization. Existing automated data analysis algorithms of TEM mNP images generally adopt a supervised approach, requiring a significant effort in human preparation of labeled data that reduces objectivity, efficiency, and generalizability. We have developed an unsupervised algorithm AutoDetect-mNP for automated analysis of TEM images that objectively extracts morphological information on convex mNPs from TEM images based on their shape attributes, requiring little to no human input in the process. The performance of AutoDetect-mNP is tested on two data sets of bright field TEM images of Au nanoparticles with different shapes and further extended to palladium nanocubes and cadmium selenide quantum dots, demonstrating that the algorithm is quantitatively reliable and can thus serve as a generalizable measure of the morphology distributions of any mNP synthesis. The AutoDetect-mNP algorithm will aid in future developments of high-throughput characterization of mNPs and the future advent of time-resolved TEM studies that can investigate reaction mechanisms of mNP synthesis and reactivity. |
format | Online Article Text |
id | pubmed-7988451 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-79884512021-03-25 AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles Wang, Xingzhi Li, Jie Ha, Hyun Dong Dahl, Jakob C. Ondry, Justin C. Moreno-Hernandez, Ivan Head-Gordon, Teresa Alivisatos, A. Paul JACS Au [Image: see text] The synthesis quality of artificial inorganic nanocrystals is most often assessed by transmission electron microscopy (TEM) for which high-throughput advances have dramatically increased both the quantity and information richness of metal nanoparticle (mNP) characterization. Existing automated data analysis algorithms of TEM mNP images generally adopt a supervised approach, requiring a significant effort in human preparation of labeled data that reduces objectivity, efficiency, and generalizability. We have developed an unsupervised algorithm AutoDetect-mNP for automated analysis of TEM images that objectively extracts morphological information on convex mNPs from TEM images based on their shape attributes, requiring little to no human input in the process. The performance of AutoDetect-mNP is tested on two data sets of bright field TEM images of Au nanoparticles with different shapes and further extended to palladium nanocubes and cadmium selenide quantum dots, demonstrating that the algorithm is quantitatively reliable and can thus serve as a generalizable measure of the morphology distributions of any mNP synthesis. The AutoDetect-mNP algorithm will aid in future developments of high-throughput characterization of mNPs and the future advent of time-resolved TEM studies that can investigate reaction mechanisms of mNP synthesis and reactivity. American Chemical Society 2021-02-25 /pmc/articles/PMC7988451/ /pubmed/33778811 http://dx.doi.org/10.1021/jacsau.0c00030 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Wang, Xingzhi Li, Jie Ha, Hyun Dong Dahl, Jakob C. Ondry, Justin C. Moreno-Hernandez, Ivan Head-Gordon, Teresa Alivisatos, A. Paul AutoDetect-mNP: An Unsupervised Machine Learning Algorithm for Automated Analysis of Transmission Electron Microscope Images of Metal Nanoparticles |
title | AutoDetect-mNP: An Unsupervised Machine Learning Algorithm
for Automated Analysis of Transmission Electron Microscope Images
of Metal Nanoparticles |
title_full | AutoDetect-mNP: An Unsupervised Machine Learning Algorithm
for Automated Analysis of Transmission Electron Microscope Images
of Metal Nanoparticles |
title_fullStr | AutoDetect-mNP: An Unsupervised Machine Learning Algorithm
for Automated Analysis of Transmission Electron Microscope Images
of Metal Nanoparticles |
title_full_unstemmed | AutoDetect-mNP: An Unsupervised Machine Learning Algorithm
for Automated Analysis of Transmission Electron Microscope Images
of Metal Nanoparticles |
title_short | AutoDetect-mNP: An Unsupervised Machine Learning Algorithm
for Automated Analysis of Transmission Electron Microscope Images
of Metal Nanoparticles |
title_sort | autodetect-mnp: an unsupervised machine learning algorithm
for automated analysis of transmission electron microscope images
of metal nanoparticles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7988451/ https://www.ncbi.nlm.nih.gov/pubmed/33778811 http://dx.doi.org/10.1021/jacsau.0c00030 |
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