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Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions

Gray mold disease caused by the fungus Botrytis cinerea damages many crop hosts worldwide and is responsible for heavy economic losses. Early diagnosis and detection of the disease would allow for more effective crop management practices to prevent outbreaks in field or greenhouse settings. Furtherm...

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Autores principales: Scarboro, Clifton G., Ruzsa, Stephanie M., Doherty, Colleen J., Kudenov, Michael W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7989972/
https://www.ncbi.nlm.nih.gov/pubmed/33778364
http://dx.doi.org/10.1002/pld3.317
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author Scarboro, Clifton G.
Ruzsa, Stephanie M.
Doherty, Colleen J.
Kudenov, Michael W.
author_facet Scarboro, Clifton G.
Ruzsa, Stephanie M.
Doherty, Colleen J.
Kudenov, Michael W.
author_sort Scarboro, Clifton G.
collection PubMed
description Gray mold disease caused by the fungus Botrytis cinerea damages many crop hosts worldwide and is responsible for heavy economic losses. Early diagnosis and detection of the disease would allow for more effective crop management practices to prevent outbreaks in field or greenhouse settings. Furthermore, having a simple, non‐invasive way to quantify the extent of gray mold disease is important for plant pathologists interested in measuring infection rates. In this paper, we design and build a bispectral imaging system for discriminating between leaf regions infected with gray mold and those that remain unharmed on a lettuce (Lactuca spp.) host. First, we describe a method to select two optimal (high contrast) spectral bands from continuous hyperspectral imagery (450–800 nm). We then explain the process of building a system based on these two spectral bands, located at 540 and 670 nm. The resultant system uses two cameras, with a narrow band‐pass spectral filter mounted on each, to measure the bispectral reflectance of a lettuce leaf. The two resulting images are combined using a normalized difference calculation that produces a single image with high contrast between the leaves’ infected and healthy regions. A classifier was then created based on the thresholding of single pixel values. We demonstrate that this simple classification produces a true‐positive rate of 95.25% with a false‐positive rate of 9.316% in laboratory conditions.
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spelling pubmed-79899722021-03-25 Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions Scarboro, Clifton G. Ruzsa, Stephanie M. Doherty, Colleen J. Kudenov, Michael W. Plant Direct Original Research Gray mold disease caused by the fungus Botrytis cinerea damages many crop hosts worldwide and is responsible for heavy economic losses. Early diagnosis and detection of the disease would allow for more effective crop management practices to prevent outbreaks in field or greenhouse settings. Furthermore, having a simple, non‐invasive way to quantify the extent of gray mold disease is important for plant pathologists interested in measuring infection rates. In this paper, we design and build a bispectral imaging system for discriminating between leaf regions infected with gray mold and those that remain unharmed on a lettuce (Lactuca spp.) host. First, we describe a method to select two optimal (high contrast) spectral bands from continuous hyperspectral imagery (450–800 nm). We then explain the process of building a system based on these two spectral bands, located at 540 and 670 nm. The resultant system uses two cameras, with a narrow band‐pass spectral filter mounted on each, to measure the bispectral reflectance of a lettuce leaf. The two resulting images are combined using a normalized difference calculation that produces a single image with high contrast between the leaves’ infected and healthy regions. A classifier was then created based on the thresholding of single pixel values. We demonstrate that this simple classification produces a true‐positive rate of 95.25% with a false‐positive rate of 9.316% in laboratory conditions. John Wiley and Sons Inc. 2021-03-24 /pmc/articles/PMC7989972/ /pubmed/33778364 http://dx.doi.org/10.1002/pld3.317 Text en © 2021 The Authors. Plant Direct published by American Society of Plant Biologists, Society for Experimental Biology and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Scarboro, Clifton G.
Ruzsa, Stephanie M.
Doherty, Colleen J.
Kudenov, Michael W.
Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions
title Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions
title_full Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions
title_fullStr Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions
title_full_unstemmed Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions
title_short Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions
title_sort quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7989972/
https://www.ncbi.nlm.nih.gov/pubmed/33778364
http://dx.doi.org/10.1002/pld3.317
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