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A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG
To achieve seizure freedom, epilepsy surgery requires the complete resection of the epileptogenic brain tissue. In intraoperative electrocorticography (ECoG) recordings, high frequency oscillations (HFOs) generated by epileptogenic tissue can be used to tailor the resection margin. However, automati...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7990937/ https://www.ncbi.nlm.nih.gov/pubmed/33762590 http://dx.doi.org/10.1038/s41598-021-85827-w |
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author | Burelo, Karla Sharifshazileh, Mohammadali Krayenbühl, Niklaus Ramantani, Georgia Indiveri, Giacomo Sarnthein, Johannes |
author_facet | Burelo, Karla Sharifshazileh, Mohammadali Krayenbühl, Niklaus Ramantani, Georgia Indiveri, Giacomo Sarnthein, Johannes |
author_sort | Burelo, Karla |
collection | PubMed |
description | To achieve seizure freedom, epilepsy surgery requires the complete resection of the epileptogenic brain tissue. In intraoperative electrocorticography (ECoG) recordings, high frequency oscillations (HFOs) generated by epileptogenic tissue can be used to tailor the resection margin. However, automatic detection of HFOs in real-time remains an open challenge. Here we present a spiking neural network (SNN) for automatic HFO detection that is optimally suited for neuromorphic hardware implementation. We trained the SNN to detect HFO signals measured from intraoperative ECoG on-line, using an independently labeled dataset (58 min, 16 recordings). We targeted the detection of HFOs in the fast ripple frequency range (250-500 Hz) and compared the network results with the labeled HFO data. We endowed the SNN with a novel artifact rejection mechanism to suppress sharp transients and demonstrate its effectiveness on the ECoG dataset. The HFO rates (median 6.6 HFO/min in pre-resection recordings) detected by this SNN are comparable to those published in the dataset (Spearman’s [Formula: see text] = 0.81). The postsurgical seizure outcome was “predicted” with 100% (CI [63 100%]) accuracy for all 8 patients. These results provide a further step towards the construction of a real-time portable battery-operated HFO detection system that can be used during epilepsy surgery to guide the resection of the epileptogenic zone. |
format | Online Article Text |
id | pubmed-7990937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-79909372021-03-26 A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG Burelo, Karla Sharifshazileh, Mohammadali Krayenbühl, Niklaus Ramantani, Georgia Indiveri, Giacomo Sarnthein, Johannes Sci Rep Article To achieve seizure freedom, epilepsy surgery requires the complete resection of the epileptogenic brain tissue. In intraoperative electrocorticography (ECoG) recordings, high frequency oscillations (HFOs) generated by epileptogenic tissue can be used to tailor the resection margin. However, automatic detection of HFOs in real-time remains an open challenge. Here we present a spiking neural network (SNN) for automatic HFO detection that is optimally suited for neuromorphic hardware implementation. We trained the SNN to detect HFO signals measured from intraoperative ECoG on-line, using an independently labeled dataset (58 min, 16 recordings). We targeted the detection of HFOs in the fast ripple frequency range (250-500 Hz) and compared the network results with the labeled HFO data. We endowed the SNN with a novel artifact rejection mechanism to suppress sharp transients and demonstrate its effectiveness on the ECoG dataset. The HFO rates (median 6.6 HFO/min in pre-resection recordings) detected by this SNN are comparable to those published in the dataset (Spearman’s [Formula: see text] = 0.81). The postsurgical seizure outcome was “predicted” with 100% (CI [63 100%]) accuracy for all 8 patients. These results provide a further step towards the construction of a real-time portable battery-operated HFO detection system that can be used during epilepsy surgery to guide the resection of the epileptogenic zone. Nature Publishing Group UK 2021-03-24 /pmc/articles/PMC7990937/ /pubmed/33762590 http://dx.doi.org/10.1038/s41598-021-85827-w Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Burelo, Karla Sharifshazileh, Mohammadali Krayenbühl, Niklaus Ramantani, Georgia Indiveri, Giacomo Sarnthein, Johannes A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG |
title | A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG |
title_full | A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG |
title_fullStr | A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG |
title_full_unstemmed | A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG |
title_short | A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG |
title_sort | spiking neural network (snn) for detecting high frequency oscillations (hfos) in the intraoperative ecog |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7990937/ https://www.ncbi.nlm.nih.gov/pubmed/33762590 http://dx.doi.org/10.1038/s41598-021-85827-w |
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