Cargando…

Clusteromics I: Principles, Protocols, and Applications to Sulfuric Acid–Base Cluster Formation

[Image: see text] We recently coined the term clusteromics as a holistic approach for obtaining insight into the chemical complexity of atmospheric molecular cluster formation and at the same time providing the foundation for thermochemical databases that can be utilized for developing machine learn...

Descripción completa

Detalles Bibliográficos
Autor principal: Elm, Jonas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7992168/
https://www.ncbi.nlm.nih.gov/pubmed/33778292
http://dx.doi.org/10.1021/acsomega.1c00306
_version_ 1783669318431539200
author Elm, Jonas
author_facet Elm, Jonas
author_sort Elm, Jonas
collection PubMed
description [Image: see text] We recently coined the term clusteromics as a holistic approach for obtaining insight into the chemical complexity of atmospheric molecular cluster formation and at the same time providing the foundation for thermochemical databases that can be utilized for developing machine learning models. Here, we present the first paper in the series that applies state-of-the-art computational methods to study multicomponent (SA)(0–2)(base)(0–2) clusters, with SA = sulfuric acid and base = [ammonia (A), methylamine (MA), dimethylamine (DMA), trimethylamine (TMA), and ethylenediamine (EDA)] with all combinations of the five bases. The initial cluster configurations are obtained using the ABCluster program and the number of relevant configurations are reduced based on PM7 and ωB97X-D/6-31++G(d,p) calculations. Thermochemical parameters are calculated based on the ωB97X-D/6-31++G(d,p) cluster structures and vibrational frequencies using the quasi-harmonic approximation. The single-point energies are refined with a high-level DLPNO-CCSD(T(0))/aug-cc-pVTZ calculation. Using the calculated thermochemical data, we perform kinetics simulations to evaluate the potential of these small (SA)(0–2)(base)(0–2) clusters to grow into larger cluster sizes. In all cases we find that having more than one type of base molecule present in the cluster will increase the potential for forming larger clusters primarily due to the increased available vapor concentration.
format Online
Article
Text
id pubmed-7992168
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-79921682021-03-26 Clusteromics I: Principles, Protocols, and Applications to Sulfuric Acid–Base Cluster Formation Elm, Jonas ACS Omega [Image: see text] We recently coined the term clusteromics as a holistic approach for obtaining insight into the chemical complexity of atmospheric molecular cluster formation and at the same time providing the foundation for thermochemical databases that can be utilized for developing machine learning models. Here, we present the first paper in the series that applies state-of-the-art computational methods to study multicomponent (SA)(0–2)(base)(0–2) clusters, with SA = sulfuric acid and base = [ammonia (A), methylamine (MA), dimethylamine (DMA), trimethylamine (TMA), and ethylenediamine (EDA)] with all combinations of the five bases. The initial cluster configurations are obtained using the ABCluster program and the number of relevant configurations are reduced based on PM7 and ωB97X-D/6-31++G(d,p) calculations. Thermochemical parameters are calculated based on the ωB97X-D/6-31++G(d,p) cluster structures and vibrational frequencies using the quasi-harmonic approximation. The single-point energies are refined with a high-level DLPNO-CCSD(T(0))/aug-cc-pVTZ calculation. Using the calculated thermochemical data, we perform kinetics simulations to evaluate the potential of these small (SA)(0–2)(base)(0–2) clusters to grow into larger cluster sizes. In all cases we find that having more than one type of base molecule present in the cluster will increase the potential for forming larger clusters primarily due to the increased available vapor concentration. American Chemical Society 2021-03-12 /pmc/articles/PMC7992168/ /pubmed/33778292 http://dx.doi.org/10.1021/acsomega.1c00306 Text en © 2021 The Author. Published by American Chemical Society Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Elm, Jonas
Clusteromics I: Principles, Protocols, and Applications to Sulfuric Acid–Base Cluster Formation
title Clusteromics I: Principles, Protocols, and Applications to Sulfuric Acid–Base Cluster Formation
title_full Clusteromics I: Principles, Protocols, and Applications to Sulfuric Acid–Base Cluster Formation
title_fullStr Clusteromics I: Principles, Protocols, and Applications to Sulfuric Acid–Base Cluster Formation
title_full_unstemmed Clusteromics I: Principles, Protocols, and Applications to Sulfuric Acid–Base Cluster Formation
title_short Clusteromics I: Principles, Protocols, and Applications to Sulfuric Acid–Base Cluster Formation
title_sort clusteromics i: principles, protocols, and applications to sulfuric acid–base cluster formation
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7992168/
https://www.ncbi.nlm.nih.gov/pubmed/33778292
http://dx.doi.org/10.1021/acsomega.1c00306
work_keys_str_mv AT elmjonas clusteromicsiprinciplesprotocolsandapplicationstosulfuricacidbaseclusterformation