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Strain-specific behavior of Mycobacterium tuberculosis in A549 lung cancer cell line
BACKGROUND: A growing body of evidence has shown the association between tuberculosis (TB) infection and lung cancer. However, the possible effect of strain‐specific behavior of Mycobacterium tuberculosis (M.tb) population, the etiological agent of TB infection in this association has been neglected...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7992940/ https://www.ncbi.nlm.nih.gov/pubmed/33765916 http://dx.doi.org/10.1186/s12859-021-04100-z |
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author | Hadifar, Shima Mostafaei, Shayan Behrouzi, Ava Fateh, Abolfazl Riahi, Parisa Siadat, Seyed Davar Vaziri, Farzam |
author_facet | Hadifar, Shima Mostafaei, Shayan Behrouzi, Ava Fateh, Abolfazl Riahi, Parisa Siadat, Seyed Davar Vaziri, Farzam |
author_sort | Hadifar, Shima |
collection | PubMed |
description | BACKGROUND: A growing body of evidence has shown the association between tuberculosis (TB) infection and lung cancer. However, the possible effect of strain‐specific behavior of Mycobacterium tuberculosis (M.tb) population, the etiological agent of TB infection in this association has been neglected. In this context, this study was conducted to investigate this association with consideration of the genetic background of strains in the M.tb population. RESULTS: We employed the elastic net penalized logistic regression model, as a statistical-learning algorithm for gene selection, to evaluate this association in 129 genes involved in TLRs and NF-κB signaling pathways in response to two different M.tb sub-lineage strains (L3-CAS1and L 4.5). Of the 129 genes, 21 were found to be associated with the two studied M.tb sub-lineages. In addition, MAPK8IP3 gene was identified as a novel gene, which has not been reported in previous lung cancer studies and may have the potential to be recognized as a novel biomarker in lung cancer investigation. CONCLUSIONS: This preliminary study provides new insights into the mechanistic association between TB infection and lung cancer. Further mechanistic investigations of this association with a large number of M.tb strains, encompassing the other main M.tb lineages and using the whole transcriptome of the host cell are inevitable. |
format | Online Article Text |
id | pubmed-7992940 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-79929402021-03-25 Strain-specific behavior of Mycobacterium tuberculosis in A549 lung cancer cell line Hadifar, Shima Mostafaei, Shayan Behrouzi, Ava Fateh, Abolfazl Riahi, Parisa Siadat, Seyed Davar Vaziri, Farzam BMC Bioinformatics Research Article BACKGROUND: A growing body of evidence has shown the association between tuberculosis (TB) infection and lung cancer. However, the possible effect of strain‐specific behavior of Mycobacterium tuberculosis (M.tb) population, the etiological agent of TB infection in this association has been neglected. In this context, this study was conducted to investigate this association with consideration of the genetic background of strains in the M.tb population. RESULTS: We employed the elastic net penalized logistic regression model, as a statistical-learning algorithm for gene selection, to evaluate this association in 129 genes involved in TLRs and NF-κB signaling pathways in response to two different M.tb sub-lineage strains (L3-CAS1and L 4.5). Of the 129 genes, 21 were found to be associated with the two studied M.tb sub-lineages. In addition, MAPK8IP3 gene was identified as a novel gene, which has not been reported in previous lung cancer studies and may have the potential to be recognized as a novel biomarker in lung cancer investigation. CONCLUSIONS: This preliminary study provides new insights into the mechanistic association between TB infection and lung cancer. Further mechanistic investigations of this association with a large number of M.tb strains, encompassing the other main M.tb lineages and using the whole transcriptome of the host cell are inevitable. BioMed Central 2021-03-25 /pmc/articles/PMC7992940/ /pubmed/33765916 http://dx.doi.org/10.1186/s12859-021-04100-z Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Hadifar, Shima Mostafaei, Shayan Behrouzi, Ava Fateh, Abolfazl Riahi, Parisa Siadat, Seyed Davar Vaziri, Farzam Strain-specific behavior of Mycobacterium tuberculosis in A549 lung cancer cell line |
title | Strain-specific behavior of Mycobacterium tuberculosis in A549 lung cancer cell line |
title_full | Strain-specific behavior of Mycobacterium tuberculosis in A549 lung cancer cell line |
title_fullStr | Strain-specific behavior of Mycobacterium tuberculosis in A549 lung cancer cell line |
title_full_unstemmed | Strain-specific behavior of Mycobacterium tuberculosis in A549 lung cancer cell line |
title_short | Strain-specific behavior of Mycobacterium tuberculosis in A549 lung cancer cell line |
title_sort | strain-specific behavior of mycobacterium tuberculosis in a549 lung cancer cell line |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7992940/ https://www.ncbi.nlm.nih.gov/pubmed/33765916 http://dx.doi.org/10.1186/s12859-021-04100-z |
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