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The aging-related risk signature in colorectal cancer
Background: Colorectal cancer (CRC) is the third most common cancer worldwide. The opening of the TCGA and GEO databases has promoted the progress of CRC prognostic assessment, while the aging-related risk signature has never been mentioned. Methods: R software packages, GSEA software, Venn diagram,...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7993742/ https://www.ncbi.nlm.nih.gov/pubmed/33658390 http://dx.doi.org/10.18632/aging.202589 |
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author | Yue, Taohua Chen, Shanwen Zhu, Jing Guo, Shihao Huang, Zhihao Wang, Pengyuan Zuo, Shuai Liu, Yucun |
author_facet | Yue, Taohua Chen, Shanwen Zhu, Jing Guo, Shihao Huang, Zhihao Wang, Pengyuan Zuo, Shuai Liu, Yucun |
author_sort | Yue, Taohua |
collection | PubMed |
description | Background: Colorectal cancer (CRC) is the third most common cancer worldwide. The opening of the TCGA and GEO databases has promoted the progress of CRC prognostic assessment, while the aging-related risk signature has never been mentioned. Methods: R software packages, GSEA software, Venn diagram, Metascape, STRING, Cytoscape, cBioPortal, TIMER and GeneMANIA website were used in this study. Results: Aging-related gene sets, GO_AGING, GO_CELL_AGING and GO_CELLULAR_SENESCENCE, were activated significantly in CRC tissues. We constructed an aging-related risk signature using LASSO COX regression in training group TCGA and validated in testing group GSE39582. The risk score was significantly associated with the overall survival of CRC patients, whose stability was clarified by stratified survival analysis and accuracy was demonstrated using the ROC curve. The risk score was significantly increased in the advanced stage, T3-4, N1-3 and M1 and positively correlated with the richness of immune cell infiltration in the tumor microenvironment. We further investigated the molecular characteristics of 15 hub genes at the DNA and protein levels and performed GSEA between high- and low-risk groups. Conclusions: The aging-related signature is a reliable prognostic analysis model and can predict the severity and immune cell infiltration of CRC patients. |
format | Online Article Text |
id | pubmed-7993742 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-79937422021-04-06 The aging-related risk signature in colorectal cancer Yue, Taohua Chen, Shanwen Zhu, Jing Guo, Shihao Huang, Zhihao Wang, Pengyuan Zuo, Shuai Liu, Yucun Aging (Albany NY) Research Paper Background: Colorectal cancer (CRC) is the third most common cancer worldwide. The opening of the TCGA and GEO databases has promoted the progress of CRC prognostic assessment, while the aging-related risk signature has never been mentioned. Methods: R software packages, GSEA software, Venn diagram, Metascape, STRING, Cytoscape, cBioPortal, TIMER and GeneMANIA website were used in this study. Results: Aging-related gene sets, GO_AGING, GO_CELL_AGING and GO_CELLULAR_SENESCENCE, were activated significantly in CRC tissues. We constructed an aging-related risk signature using LASSO COX regression in training group TCGA and validated in testing group GSE39582. The risk score was significantly associated with the overall survival of CRC patients, whose stability was clarified by stratified survival analysis and accuracy was demonstrated using the ROC curve. The risk score was significantly increased in the advanced stage, T3-4, N1-3 and M1 and positively correlated with the richness of immune cell infiltration in the tumor microenvironment. We further investigated the molecular characteristics of 15 hub genes at the DNA and protein levels and performed GSEA between high- and low-risk groups. Conclusions: The aging-related signature is a reliable prognostic analysis model and can predict the severity and immune cell infiltration of CRC patients. Impact Journals 2021-02-26 /pmc/articles/PMC7993742/ /pubmed/33658390 http://dx.doi.org/10.18632/aging.202589 Text en Copyright: © 2021 Yue et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Yue, Taohua Chen, Shanwen Zhu, Jing Guo, Shihao Huang, Zhihao Wang, Pengyuan Zuo, Shuai Liu, Yucun The aging-related risk signature in colorectal cancer |
title | The aging-related risk signature in colorectal cancer |
title_full | The aging-related risk signature in colorectal cancer |
title_fullStr | The aging-related risk signature in colorectal cancer |
title_full_unstemmed | The aging-related risk signature in colorectal cancer |
title_short | The aging-related risk signature in colorectal cancer |
title_sort | aging-related risk signature in colorectal cancer |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7993742/ https://www.ncbi.nlm.nih.gov/pubmed/33658390 http://dx.doi.org/10.18632/aging.202589 |
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