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How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity?
Spectral similarity indices were used to select similar soil samples from a spectral library and improve the predictive accuracy of target samples. There are many similarity indices available, and precisely how to select the optimum index has become a critical question. Five similarity indices were...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7993829/ https://www.ncbi.nlm.nih.gov/pubmed/33765035 http://dx.doi.org/10.1371/journal.pone.0247028 |
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author | Zeng, R. Zhang, J. P. Cai, K. Gao, W. C. Pan, W. J. Jiang, C. Y. Zhang, P. Y. Wu, B. W. Wang, C. H. Jin, X. Y. Li, D. C. |
author_facet | Zeng, R. Zhang, J. P. Cai, K. Gao, W. C. Pan, W. J. Jiang, C. Y. Zhang, P. Y. Wu, B. W. Wang, C. H. Jin, X. Y. Li, D. C. |
author_sort | Zeng, R. |
collection | PubMed |
description | Spectral similarity indices were used to select similar soil samples from a spectral library and improve the predictive accuracy of target samples. There are many similarity indices available, and precisely how to select the optimum index has become a critical question. Five similarity indices were evaluated: Spectral angle mapper (SAM), Euclidean distance (ED), Mahalanobis distance (MD), SAM_pca and ED_pca in the space of principal components applied to a global soil spectral library. The accordance between spectral and compositional similarity was used to select the optimum index. Then the optimum index was evaluated if it can maintain the greatest predictive accuracy when selecting similar samples from a spectral library for the prediction of a target sample using a partial least squares regression (PLSR) model. The evaluated physiochemical properties were: soil organic carbon, pH, cation exchange capacity (CEC), clay, silt, and sand content. SAM and SAM_pca selected samples were closer in composition compared to the target samples. Based on similar samples selected using these two indices, PLSR models achieved the highest predictive accuracy for all soil properties, save for CEC. This validates the hypothesis that the accordance information between spectral and compositional similarity can help select the appropriate similarity index when selecting similar samples from a spectral library for prediction. |
format | Online Article Text |
id | pubmed-7993829 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-79938292021-04-05 How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity? Zeng, R. Zhang, J. P. Cai, K. Gao, W. C. Pan, W. J. Jiang, C. Y. Zhang, P. Y. Wu, B. W. Wang, C. H. Jin, X. Y. Li, D. C. PLoS One Research Article Spectral similarity indices were used to select similar soil samples from a spectral library and improve the predictive accuracy of target samples. There are many similarity indices available, and precisely how to select the optimum index has become a critical question. Five similarity indices were evaluated: Spectral angle mapper (SAM), Euclidean distance (ED), Mahalanobis distance (MD), SAM_pca and ED_pca in the space of principal components applied to a global soil spectral library. The accordance between spectral and compositional similarity was used to select the optimum index. Then the optimum index was evaluated if it can maintain the greatest predictive accuracy when selecting similar samples from a spectral library for the prediction of a target sample using a partial least squares regression (PLSR) model. The evaluated physiochemical properties were: soil organic carbon, pH, cation exchange capacity (CEC), clay, silt, and sand content. SAM and SAM_pca selected samples were closer in composition compared to the target samples. Based on similar samples selected using these two indices, PLSR models achieved the highest predictive accuracy for all soil properties, save for CEC. This validates the hypothesis that the accordance information between spectral and compositional similarity can help select the appropriate similarity index when selecting similar samples from a spectral library for prediction. Public Library of Science 2021-03-25 /pmc/articles/PMC7993829/ /pubmed/33765035 http://dx.doi.org/10.1371/journal.pone.0247028 Text en © 2021 Zeng et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Zeng, R. Zhang, J. P. Cai, K. Gao, W. C. Pan, W. J. Jiang, C. Y. Zhang, P. Y. Wu, B. W. Wang, C. H. Jin, X. Y. Li, D. C. How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity? |
title | How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity? |
title_full | How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity? |
title_fullStr | How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity? |
title_full_unstemmed | How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity? |
title_short | How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity? |
title_sort | how similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity? |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7993829/ https://www.ncbi.nlm.nih.gov/pubmed/33765035 http://dx.doi.org/10.1371/journal.pone.0247028 |
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