Cargando…

How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity?

Spectral similarity indices were used to select similar soil samples from a spectral library and improve the predictive accuracy of target samples. There are many similarity indices available, and precisely how to select the optimum index has become a critical question. Five similarity indices were...

Descripción completa

Detalles Bibliográficos
Autores principales: Zeng, R., Zhang, J. P., Cai, K., Gao, W. C., Pan, W. J., Jiang, C. Y., Zhang, P. Y., Wu, B. W., Wang, C. H., Jin, X. Y., Li, D. C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7993829/
https://www.ncbi.nlm.nih.gov/pubmed/33765035
http://dx.doi.org/10.1371/journal.pone.0247028
_version_ 1783669635512532992
author Zeng, R.
Zhang, J. P.
Cai, K.
Gao, W. C.
Pan, W. J.
Jiang, C. Y.
Zhang, P. Y.
Wu, B. W.
Wang, C. H.
Jin, X. Y.
Li, D. C.
author_facet Zeng, R.
Zhang, J. P.
Cai, K.
Gao, W. C.
Pan, W. J.
Jiang, C. Y.
Zhang, P. Y.
Wu, B. W.
Wang, C. H.
Jin, X. Y.
Li, D. C.
author_sort Zeng, R.
collection PubMed
description Spectral similarity indices were used to select similar soil samples from a spectral library and improve the predictive accuracy of target samples. There are many similarity indices available, and precisely how to select the optimum index has become a critical question. Five similarity indices were evaluated: Spectral angle mapper (SAM), Euclidean distance (ED), Mahalanobis distance (MD), SAM_pca and ED_pca in the space of principal components applied to a global soil spectral library. The accordance between spectral and compositional similarity was used to select the optimum index. Then the optimum index was evaluated if it can maintain the greatest predictive accuracy when selecting similar samples from a spectral library for the prediction of a target sample using a partial least squares regression (PLSR) model. The evaluated physiochemical properties were: soil organic carbon, pH, cation exchange capacity (CEC), clay, silt, and sand content. SAM and SAM_pca selected samples were closer in composition compared to the target samples. Based on similar samples selected using these two indices, PLSR models achieved the highest predictive accuracy for all soil properties, save for CEC. This validates the hypothesis that the accordance information between spectral and compositional similarity can help select the appropriate similarity index when selecting similar samples from a spectral library for prediction.
format Online
Article
Text
id pubmed-7993829
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-79938292021-04-05 How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity? Zeng, R. Zhang, J. P. Cai, K. Gao, W. C. Pan, W. J. Jiang, C. Y. Zhang, P. Y. Wu, B. W. Wang, C. H. Jin, X. Y. Li, D. C. PLoS One Research Article Spectral similarity indices were used to select similar soil samples from a spectral library and improve the predictive accuracy of target samples. There are many similarity indices available, and precisely how to select the optimum index has become a critical question. Five similarity indices were evaluated: Spectral angle mapper (SAM), Euclidean distance (ED), Mahalanobis distance (MD), SAM_pca and ED_pca in the space of principal components applied to a global soil spectral library. The accordance between spectral and compositional similarity was used to select the optimum index. Then the optimum index was evaluated if it can maintain the greatest predictive accuracy when selecting similar samples from a spectral library for the prediction of a target sample using a partial least squares regression (PLSR) model. The evaluated physiochemical properties were: soil organic carbon, pH, cation exchange capacity (CEC), clay, silt, and sand content. SAM and SAM_pca selected samples were closer in composition compared to the target samples. Based on similar samples selected using these two indices, PLSR models achieved the highest predictive accuracy for all soil properties, save for CEC. This validates the hypothesis that the accordance information between spectral and compositional similarity can help select the appropriate similarity index when selecting similar samples from a spectral library for prediction. Public Library of Science 2021-03-25 /pmc/articles/PMC7993829/ /pubmed/33765035 http://dx.doi.org/10.1371/journal.pone.0247028 Text en © 2021 Zeng et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Zeng, R.
Zhang, J. P.
Cai, K.
Gao, W. C.
Pan, W. J.
Jiang, C. Y.
Zhang, P. Y.
Wu, B. W.
Wang, C. H.
Jin, X. Y.
Li, D. C.
How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity?
title How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity?
title_full How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity?
title_fullStr How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity?
title_full_unstemmed How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity?
title_short How similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity?
title_sort how similar is “similar,” or what is the best measure of soil spectral and physiochemical similarity?
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7993829/
https://www.ncbi.nlm.nih.gov/pubmed/33765035
http://dx.doi.org/10.1371/journal.pone.0247028
work_keys_str_mv AT zengr howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT zhangjp howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT caik howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT gaowc howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT panwj howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT jiangcy howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT zhangpy howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT wubw howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT wangch howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT jinxy howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity
AT lidc howsimilarissimilarorwhatisthebestmeasureofsoilspectralandphysiochemicalsimilarity