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AMRmap: An Interactive Web Platform for Analysis of Antimicrobial Resistance Surveillance Data in Russia

Surveillance of antimicrobial resistance (AMR) is crucial for identifying trends in resistance and developing strategies for prevention and treatment of infections. Globally, AMR surveillance systems differ in terms of organizational principles, comprehensiveness, accessibility, and usability of dat...

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Autores principales: Kuzmenkov, Alexey Y., Trushin, Ivan V., Vinogradova, Alina G., Avramenko, Andrey A., Sukhorukova, Marina V., Malhotra-Kumar, Surbhi, Dekhnich, Andrey V., Edelstein, Mikhail V., Kozlov, Roman S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7994358/
https://www.ncbi.nlm.nih.gov/pubmed/33776956
http://dx.doi.org/10.3389/fmicb.2021.620002
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author Kuzmenkov, Alexey Y.
Trushin, Ivan V.
Vinogradova, Alina G.
Avramenko, Andrey A.
Sukhorukova, Marina V.
Malhotra-Kumar, Surbhi
Dekhnich, Andrey V.
Edelstein, Mikhail V.
Kozlov, Roman S.
author_facet Kuzmenkov, Alexey Y.
Trushin, Ivan V.
Vinogradova, Alina G.
Avramenko, Andrey A.
Sukhorukova, Marina V.
Malhotra-Kumar, Surbhi
Dekhnich, Andrey V.
Edelstein, Mikhail V.
Kozlov, Roman S.
author_sort Kuzmenkov, Alexey Y.
collection PubMed
description Surveillance of antimicrobial resistance (AMR) is crucial for identifying trends in resistance and developing strategies for prevention and treatment of infections. Globally, AMR surveillance systems differ in terms of organizational principles, comprehensiveness, accessibility, and usability of data presentation. Until recently, the data on AMR in Russia were scarcely available, especially to international community, despite the fact that the large prospective multicenter surveillance in Russia was conducted and data were accumulated for over 20 years. We describe the source of data, structure, and functionality of a new-generation web platform, called AMRmap (https://amrmap.net/), for analysis of AMR surveillance data in Russia. The developed platform currently comprises susceptibility data of >40,000 clinical isolates, and the data on abundance of key resistance determinants, including acquired carbapenemases in gram-negatives, are updated annually with information on >5,000 new isolates. The AMRmap allows smart data filtration by multiple parameters and provides interactive data analysis and visualization tools: MIC and S/I/R distribution plots, time-trends and regression plots, associated resistance plots, prevalence maps, statistical significance graphs, and tables.
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spelling pubmed-79943582021-03-27 AMRmap: An Interactive Web Platform for Analysis of Antimicrobial Resistance Surveillance Data in Russia Kuzmenkov, Alexey Y. Trushin, Ivan V. Vinogradova, Alina G. Avramenko, Andrey A. Sukhorukova, Marina V. Malhotra-Kumar, Surbhi Dekhnich, Andrey V. Edelstein, Mikhail V. Kozlov, Roman S. Front Microbiol Microbiology Surveillance of antimicrobial resistance (AMR) is crucial for identifying trends in resistance and developing strategies for prevention and treatment of infections. Globally, AMR surveillance systems differ in terms of organizational principles, comprehensiveness, accessibility, and usability of data presentation. Until recently, the data on AMR in Russia were scarcely available, especially to international community, despite the fact that the large prospective multicenter surveillance in Russia was conducted and data were accumulated for over 20 years. We describe the source of data, structure, and functionality of a new-generation web platform, called AMRmap (https://amrmap.net/), for analysis of AMR surveillance data in Russia. The developed platform currently comprises susceptibility data of >40,000 clinical isolates, and the data on abundance of key resistance determinants, including acquired carbapenemases in gram-negatives, are updated annually with information on >5,000 new isolates. The AMRmap allows smart data filtration by multiple parameters and provides interactive data analysis and visualization tools: MIC and S/I/R distribution plots, time-trends and regression plots, associated resistance plots, prevalence maps, statistical significance graphs, and tables. Frontiers Media S.A. 2021-03-12 /pmc/articles/PMC7994358/ /pubmed/33776956 http://dx.doi.org/10.3389/fmicb.2021.620002 Text en Copyright © 2021 Kuzmenkov, Trushin, Vinogradova, Avramenko, Sukhorukova, Malhotra-Kumar, Dekhnich, Edelstein and Kozlov. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Kuzmenkov, Alexey Y.
Trushin, Ivan V.
Vinogradova, Alina G.
Avramenko, Andrey A.
Sukhorukova, Marina V.
Malhotra-Kumar, Surbhi
Dekhnich, Andrey V.
Edelstein, Mikhail V.
Kozlov, Roman S.
AMRmap: An Interactive Web Platform for Analysis of Antimicrobial Resistance Surveillance Data in Russia
title AMRmap: An Interactive Web Platform for Analysis of Antimicrobial Resistance Surveillance Data in Russia
title_full AMRmap: An Interactive Web Platform for Analysis of Antimicrobial Resistance Surveillance Data in Russia
title_fullStr AMRmap: An Interactive Web Platform for Analysis of Antimicrobial Resistance Surveillance Data in Russia
title_full_unstemmed AMRmap: An Interactive Web Platform for Analysis of Antimicrobial Resistance Surveillance Data in Russia
title_short AMRmap: An Interactive Web Platform for Analysis of Antimicrobial Resistance Surveillance Data in Russia
title_sort amrmap: an interactive web platform for analysis of antimicrobial resistance surveillance data in russia
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7994358/
https://www.ncbi.nlm.nih.gov/pubmed/33776956
http://dx.doi.org/10.3389/fmicb.2021.620002
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