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Comprehensive Analysis of Ferroptosis Regulators in Lung Adenocarcinomas Identifies Prognostic and Immunotherapy-Related Biomarkers

Ferroptosis is a newly discovered type of programmed cell death that differs from canonical apoptosis. However, the potential role of ferroptosis in lung adenocarcinoma (LUAD) has not been elaborated. In total, 1,328 samples from databases and 36 ferroptosis regulators were included in this study. B...

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Autores principales: Sun, Sijin, Guo, Wei, Lv, Fang, Zhang, Guochao, Wang, Juhong, Li, Renda, Tan, Fengwei, Li, Ning, Xue, Qi, Gao, Yibo, Gao, Shugeng, He, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7994623/
https://www.ncbi.nlm.nih.gov/pubmed/33778001
http://dx.doi.org/10.3389/fmolb.2021.587436
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author Sun, Sijin
Guo, Wei
Lv, Fang
Zhang, Guochao
Wang, Juhong
Li, Renda
Tan, Fengwei
Li, Ning
Xue, Qi
Gao, Yibo
Gao, Shugeng
He, Jie
author_facet Sun, Sijin
Guo, Wei
Lv, Fang
Zhang, Guochao
Wang, Juhong
Li, Renda
Tan, Fengwei
Li, Ning
Xue, Qi
Gao, Yibo
Gao, Shugeng
He, Jie
author_sort Sun, Sijin
collection PubMed
description Ferroptosis is a newly discovered type of programmed cell death that differs from canonical apoptosis. However, the potential role of ferroptosis in lung adenocarcinoma (LUAD) has not been elaborated. In total, 1,328 samples from databases and 36 ferroptosis regulators were included in this study. By combining random survival forest and principal component analysis algorithms, a robust prognostic ferroptosis-related risk score (FRRS) was constructed, and the performance was validated in three independent datasets. Based on the median risk score, two subgroups were identified. Then, comparisons, including of mutational profiles, functional enrichment analyses and immune components, were conducted between subgroups. An immunotherapy cohort was applied to explore potential therapeutic-related biomarkers. Finally, the clinical utility of FRRS was validated in a proteomic cohort. In the TCGA-LUAD cohort, FRRS was calculated using the expression of 11 selected genes, and patients with high FRRS had a significantly (p < 0.001) worse prognosis than those with low FRRS. Multivariate regression suggested that FRRS was an independent prognostic factor. Functional enrichment analysis indicated that FRRS was mainly involved in cell cycle, metabolic and immune-related pathways. Furthermore, FRRS was shown to be significantly (p < 0.001) associated with the abundance of CD8 T cells and tumor mutation burden (TMB). The combination of TMB and FANCD2 expression, the main contributor to FRRS, substantially increased the precision of predicting the therapeutic response. In conclusion, the present study revealed the potential role of ferroptosis regulators in LUAD and identified ferroptosis-related biomarkers for prognostic and immunotherapeutic predictions.
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spelling pubmed-79946232021-03-27 Comprehensive Analysis of Ferroptosis Regulators in Lung Adenocarcinomas Identifies Prognostic and Immunotherapy-Related Biomarkers Sun, Sijin Guo, Wei Lv, Fang Zhang, Guochao Wang, Juhong Li, Renda Tan, Fengwei Li, Ning Xue, Qi Gao, Yibo Gao, Shugeng He, Jie Front Mol Biosci Molecular Biosciences Ferroptosis is a newly discovered type of programmed cell death that differs from canonical apoptosis. However, the potential role of ferroptosis in lung adenocarcinoma (LUAD) has not been elaborated. In total, 1,328 samples from databases and 36 ferroptosis regulators were included in this study. By combining random survival forest and principal component analysis algorithms, a robust prognostic ferroptosis-related risk score (FRRS) was constructed, and the performance was validated in three independent datasets. Based on the median risk score, two subgroups were identified. Then, comparisons, including of mutational profiles, functional enrichment analyses and immune components, were conducted between subgroups. An immunotherapy cohort was applied to explore potential therapeutic-related biomarkers. Finally, the clinical utility of FRRS was validated in a proteomic cohort. In the TCGA-LUAD cohort, FRRS was calculated using the expression of 11 selected genes, and patients with high FRRS had a significantly (p < 0.001) worse prognosis than those with low FRRS. Multivariate regression suggested that FRRS was an independent prognostic factor. Functional enrichment analysis indicated that FRRS was mainly involved in cell cycle, metabolic and immune-related pathways. Furthermore, FRRS was shown to be significantly (p < 0.001) associated with the abundance of CD8 T cells and tumor mutation burden (TMB). The combination of TMB and FANCD2 expression, the main contributor to FRRS, substantially increased the precision of predicting the therapeutic response. In conclusion, the present study revealed the potential role of ferroptosis regulators in LUAD and identified ferroptosis-related biomarkers for prognostic and immunotherapeutic predictions. Frontiers Media S.A. 2021-03-12 /pmc/articles/PMC7994623/ /pubmed/33778001 http://dx.doi.org/10.3389/fmolb.2021.587436 Text en Copyright © 2021 Sun, Guo, Lv, Zhang, Wang, Li, Tan, Li, Xue, Gao, Gao and He. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Sun, Sijin
Guo, Wei
Lv, Fang
Zhang, Guochao
Wang, Juhong
Li, Renda
Tan, Fengwei
Li, Ning
Xue, Qi
Gao, Yibo
Gao, Shugeng
He, Jie
Comprehensive Analysis of Ferroptosis Regulators in Lung Adenocarcinomas Identifies Prognostic and Immunotherapy-Related Biomarkers
title Comprehensive Analysis of Ferroptosis Regulators in Lung Adenocarcinomas Identifies Prognostic and Immunotherapy-Related Biomarkers
title_full Comprehensive Analysis of Ferroptosis Regulators in Lung Adenocarcinomas Identifies Prognostic and Immunotherapy-Related Biomarkers
title_fullStr Comprehensive Analysis of Ferroptosis Regulators in Lung Adenocarcinomas Identifies Prognostic and Immunotherapy-Related Biomarkers
title_full_unstemmed Comprehensive Analysis of Ferroptosis Regulators in Lung Adenocarcinomas Identifies Prognostic and Immunotherapy-Related Biomarkers
title_short Comprehensive Analysis of Ferroptosis Regulators in Lung Adenocarcinomas Identifies Prognostic and Immunotherapy-Related Biomarkers
title_sort comprehensive analysis of ferroptosis regulators in lung adenocarcinomas identifies prognostic and immunotherapy-related biomarkers
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7994623/
https://www.ncbi.nlm.nih.gov/pubmed/33778001
http://dx.doi.org/10.3389/fmolb.2021.587436
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