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Controlling network ensembles
The field of optimal control typically requires the assumption of perfect knowledge of the system one desires to control, which is an unrealistic assumption for biological systems, or networks, typically affected by high levels of uncertainty. Here, we investigate the minimum energy control of netwo...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7994643/ https://www.ncbi.nlm.nih.gov/pubmed/33767188 http://dx.doi.org/10.1038/s41467-021-22172-6 |
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author | Klickstein, Isaac Sorrentino, Francesco |
author_facet | Klickstein, Isaac Sorrentino, Francesco |
author_sort | Klickstein, Isaac |
collection | PubMed |
description | The field of optimal control typically requires the assumption of perfect knowledge of the system one desires to control, which is an unrealistic assumption for biological systems, or networks, typically affected by high levels of uncertainty. Here, we investigate the minimum energy control of network ensembles, which may take one of a number of possible realizations. We ensure the controller derived can perform the desired control with a tunable amount of accuracy and we study how the control energy and the overall control cost scale with the number of possible realizations. Our focus is in characterizing the solution of the optimal control problem in the limit in which the systems are drawn from a continuous distribution, and in particular, how to properly pose the weighting terms in the objective function. We verify the theory in three examples of interest: a unidirectional chain network with uncertain edge weights and self-loop weights, a network where each edge weight is drawn from a given distribution, and the Jacobian of the dynamics corresponding to the cell signaling network of autophagy in the presence of uncertain parameters. |
format | Online Article Text |
id | pubmed-7994643 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-79946432021-04-16 Controlling network ensembles Klickstein, Isaac Sorrentino, Francesco Nat Commun Article The field of optimal control typically requires the assumption of perfect knowledge of the system one desires to control, which is an unrealistic assumption for biological systems, or networks, typically affected by high levels of uncertainty. Here, we investigate the minimum energy control of network ensembles, which may take one of a number of possible realizations. We ensure the controller derived can perform the desired control with a tunable amount of accuracy and we study how the control energy and the overall control cost scale with the number of possible realizations. Our focus is in characterizing the solution of the optimal control problem in the limit in which the systems are drawn from a continuous distribution, and in particular, how to properly pose the weighting terms in the objective function. We verify the theory in three examples of interest: a unidirectional chain network with uncertain edge weights and self-loop weights, a network where each edge weight is drawn from a given distribution, and the Jacobian of the dynamics corresponding to the cell signaling network of autophagy in the presence of uncertain parameters. Nature Publishing Group UK 2021-03-25 /pmc/articles/PMC7994643/ /pubmed/33767188 http://dx.doi.org/10.1038/s41467-021-22172-6 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Klickstein, Isaac Sorrentino, Francesco Controlling network ensembles |
title | Controlling network ensembles |
title_full | Controlling network ensembles |
title_fullStr | Controlling network ensembles |
title_full_unstemmed | Controlling network ensembles |
title_short | Controlling network ensembles |
title_sort | controlling network ensembles |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7994643/ https://www.ncbi.nlm.nih.gov/pubmed/33767188 http://dx.doi.org/10.1038/s41467-021-22172-6 |
work_keys_str_mv | AT klicksteinisaac controllingnetworkensembles AT sorrentinofrancesco controllingnetworkensembles |