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The complete chloroplast genome of Schizostachyum dumetorum var. xinwuense (Bambusoideae: Poaceae)

Schizostachyum dumetorum var. xinwuense (T.H.Wen & J.Y.Chin) N.H.Xia is an arborescent bamboo that is native to Jiangxi, China. The bamboo culm wall of this species is extremely thin, which has high economic value and ecological benefits. Here, we assembled the complete chloroplast genome of S....

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Autores principales: Zhao-yan, Yu, Yu-shan, Tan, Jie, Zhou, Jia-jia, Li, Qi-rong, Guo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995811/
https://www.ncbi.nlm.nih.gov/pubmed/33796705
http://dx.doi.org/10.1080/23802359.2021.1889410
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author Zhao-yan, Yu
Yu-shan, Tan
Jie, Zhou
Jia-jia, Li
Qi-rong, Guo
author_facet Zhao-yan, Yu
Yu-shan, Tan
Jie, Zhou
Jia-jia, Li
Qi-rong, Guo
author_sort Zhao-yan, Yu
collection PubMed
description Schizostachyum dumetorum var. xinwuense (T.H.Wen & J.Y.Chin) N.H.Xia is an arborescent bamboo that is native to Jiangxi, China. The bamboo culm wall of this species is extremely thin, which has high economic value and ecological benefits. Here, we assembled the complete chloroplast genome of S. dumetorum var. xinwuense using Illumina pair-end sequencing data in this work. The total genome size of S. dumetorum var. xinwuense was 139,230 bp in length, containing a large single-copy (LSC) region of 82,876 bp, a small single-copy (SSC) region of 12,877 bp, and a pair of inverted repeat (IR) regions of 21,777 bp. The overall GC content of the genome was 38.87%, and the corresponding GC values of the LSC, SSC, and IR regions were 36.98%, 32.83%, and 44.17%, respectively. The genome contained a total of 112 genes, including 75 protein-coding, 30 tRNA, and seven rRNA. Phylogenetic analysis of S. dumetorum var. xinwuense positioned it in a strongly supported clade with Arundinaria appalachiana. These data show the phylogenetic location of Schizostachyum dumetorum var. xinwuense within the family of the Bambusoideae and contribute to the biodiversity and systematics of the Bambusoideae.
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spelling pubmed-79958112021-03-31 The complete chloroplast genome of Schizostachyum dumetorum var. xinwuense (Bambusoideae: Poaceae) Zhao-yan, Yu Yu-shan, Tan Jie, Zhou Jia-jia, Li Qi-rong, Guo Mitochondrial DNA B Resour Mitogenome Announcement Schizostachyum dumetorum var. xinwuense (T.H.Wen & J.Y.Chin) N.H.Xia is an arborescent bamboo that is native to Jiangxi, China. The bamboo culm wall of this species is extremely thin, which has high economic value and ecological benefits. Here, we assembled the complete chloroplast genome of S. dumetorum var. xinwuense using Illumina pair-end sequencing data in this work. The total genome size of S. dumetorum var. xinwuense was 139,230 bp in length, containing a large single-copy (LSC) region of 82,876 bp, a small single-copy (SSC) region of 12,877 bp, and a pair of inverted repeat (IR) regions of 21,777 bp. The overall GC content of the genome was 38.87%, and the corresponding GC values of the LSC, SSC, and IR regions were 36.98%, 32.83%, and 44.17%, respectively. The genome contained a total of 112 genes, including 75 protein-coding, 30 tRNA, and seven rRNA. Phylogenetic analysis of S. dumetorum var. xinwuense positioned it in a strongly supported clade with Arundinaria appalachiana. These data show the phylogenetic location of Schizostachyum dumetorum var. xinwuense within the family of the Bambusoideae and contribute to the biodiversity and systematics of the Bambusoideae. Taylor & Francis 2021-03-18 /pmc/articles/PMC7995811/ /pubmed/33796705 http://dx.doi.org/10.1080/23802359.2021.1889410 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhao-yan, Yu
Yu-shan, Tan
Jie, Zhou
Jia-jia, Li
Qi-rong, Guo
The complete chloroplast genome of Schizostachyum dumetorum var. xinwuense (Bambusoideae: Poaceae)
title The complete chloroplast genome of Schizostachyum dumetorum var. xinwuense (Bambusoideae: Poaceae)
title_full The complete chloroplast genome of Schizostachyum dumetorum var. xinwuense (Bambusoideae: Poaceae)
title_fullStr The complete chloroplast genome of Schizostachyum dumetorum var. xinwuense (Bambusoideae: Poaceae)
title_full_unstemmed The complete chloroplast genome of Schizostachyum dumetorum var. xinwuense (Bambusoideae: Poaceae)
title_short The complete chloroplast genome of Schizostachyum dumetorum var. xinwuense (Bambusoideae: Poaceae)
title_sort complete chloroplast genome of schizostachyum dumetorum var. xinwuense (bambusoideae: poaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995811/
https://www.ncbi.nlm.nih.gov/pubmed/33796705
http://dx.doi.org/10.1080/23802359.2021.1889410
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