The complete chloroplast genome sequence of coastal psammophyte, Ixeris repens (Asteraceae, subtribe Crepidinae), in Korea

We report the first complete chloroplast genome sequence of psammophyte, Ixeris repens, on the coastal dunes in Korea. The complete plastid genome is 153,017 bp in total length, with one large single copy (LSC; 84,242 bp), one small single copy (SSC; 18,495 bp), and two inverted repeat (IR) regions...

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Autores principales: Lee, Woong, Yang, JiYoung, Kim, Seung-Chul, Pak, Jae-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995821/
https://www.ncbi.nlm.nih.gov/pubmed/33796734
http://dx.doi.org/10.1080/23802359.2021.1899076
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author Lee, Woong
Yang, JiYoung
Kim, Seung-Chul
Pak, Jae-Hong
author_facet Lee, Woong
Yang, JiYoung
Kim, Seung-Chul
Pak, Jae-Hong
author_sort Lee, Woong
collection PubMed
description We report the first complete chloroplast genome sequence of psammophyte, Ixeris repens, on the coastal dunes in Korea. The complete plastid genome is 153,017 bp in total length, with one large single copy (LSC; 84,242 bp), one small single copy (SSC; 18,495 bp), and two inverted repeat (IR) regions (IR(a) and IR(b), each with 25,140 bp). The overall GC content is 37.6% and the genome contains 130 genes, including 85 protein-coding, 37 transfer RNA and 8 ribosomal RNA genes. Phylogenetic analysis based on 17 representative plastomes of the family Asteraceae suggests that Ixeris repens is sister to congeneric species I. polycephala with strong bootstrap support (100%) and also that monophyletic Ixeris is sister to the clade containing Taraxacum, Youngia, Lapsanastrum, and Crepidiastrum.
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spelling pubmed-79958212021-03-31 The complete chloroplast genome sequence of coastal psammophyte, Ixeris repens (Asteraceae, subtribe Crepidinae), in Korea Lee, Woong Yang, JiYoung Kim, Seung-Chul Pak, Jae-Hong Mitochondrial DNA B Resour Mitogenome Announcement We report the first complete chloroplast genome sequence of psammophyte, Ixeris repens, on the coastal dunes in Korea. The complete plastid genome is 153,017 bp in total length, with one large single copy (LSC; 84,242 bp), one small single copy (SSC; 18,495 bp), and two inverted repeat (IR) regions (IR(a) and IR(b), each with 25,140 bp). The overall GC content is 37.6% and the genome contains 130 genes, including 85 protein-coding, 37 transfer RNA and 8 ribosomal RNA genes. Phylogenetic analysis based on 17 representative plastomes of the family Asteraceae suggests that Ixeris repens is sister to congeneric species I. polycephala with strong bootstrap support (100%) and also that monophyletic Ixeris is sister to the clade containing Taraxacum, Youngia, Lapsanastrum, and Crepidiastrum. Taylor & Francis 2021-03-19 /pmc/articles/PMC7995821/ /pubmed/33796734 http://dx.doi.org/10.1080/23802359.2021.1899076 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lee, Woong
Yang, JiYoung
Kim, Seung-Chul
Pak, Jae-Hong
The complete chloroplast genome sequence of coastal psammophyte, Ixeris repens (Asteraceae, subtribe Crepidinae), in Korea
title The complete chloroplast genome sequence of coastal psammophyte, Ixeris repens (Asteraceae, subtribe Crepidinae), in Korea
title_full The complete chloroplast genome sequence of coastal psammophyte, Ixeris repens (Asteraceae, subtribe Crepidinae), in Korea
title_fullStr The complete chloroplast genome sequence of coastal psammophyte, Ixeris repens (Asteraceae, subtribe Crepidinae), in Korea
title_full_unstemmed The complete chloroplast genome sequence of coastal psammophyte, Ixeris repens (Asteraceae, subtribe Crepidinae), in Korea
title_short The complete chloroplast genome sequence of coastal psammophyte, Ixeris repens (Asteraceae, subtribe Crepidinae), in Korea
title_sort complete chloroplast genome sequence of coastal psammophyte, ixeris repens (asteraceae, subtribe crepidinae), in korea
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995821/
https://www.ncbi.nlm.nih.gov/pubmed/33796734
http://dx.doi.org/10.1080/23802359.2021.1899076
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