The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)

The complete mitochondrial genome of Trematomus loennbergii was studied using NGS technology with PacBio platform. The mitochondrial genome size was 19,374bp and it had 13 protein-coding genes, 22 tRNAs and 2 rRNAs. There were 4 types of stop codons which were TAA, TAG, AGG and T(AA) but start codon...

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Autores principales: Choi, Eunkyung, Im, Tae-Eul, Lee, Seung Jae, Jo, Euna, Kim, Jinmu, Kim, Sun Hee, Chi, Young Min, Kim, Jeong-Hoon, Park, Hyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995823/
https://www.ncbi.nlm.nih.gov/pubmed/33796728
http://dx.doi.org/10.1080/23802359.2021.1899070
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author Choi, Eunkyung
Im, Tae-Eul
Lee, Seung Jae
Jo, Euna
Kim, Jinmu
Kim, Sun Hee
Chi, Young Min
Kim, Jeong-Hoon
Park, Hyun
author_facet Choi, Eunkyung
Im, Tae-Eul
Lee, Seung Jae
Jo, Euna
Kim, Jinmu
Kim, Sun Hee
Chi, Young Min
Kim, Jeong-Hoon
Park, Hyun
author_sort Choi, Eunkyung
collection PubMed
description The complete mitochondrial genome of Trematomus loennbergii was studied using NGS technology with PacBio platform. The mitochondrial genome size was 19,374bp and it had 13 protein-coding genes, 22 tRNAs and 2 rRNAs. There were 4 types of stop codons which were TAA, TAG, AGG and T(AA) but start codon type was only one (ATG). The contents of GC were 44.09% and AT contents were 55.91%. To conduct phylogenetic analysis, 12 species in 3 families were used. The result suggested that T. loennbergii was close to Pagothenia borchgrevinki in Nototheniidae. This study would provide a fundamental data for molecular evolution of T. loennbergii.
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spelling pubmed-79958232021-03-31 The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae) Choi, Eunkyung Im, Tae-Eul Lee, Seung Jae Jo, Euna Kim, Jinmu Kim, Sun Hee Chi, Young Min Kim, Jeong-Hoon Park, Hyun Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of Trematomus loennbergii was studied using NGS technology with PacBio platform. The mitochondrial genome size was 19,374bp and it had 13 protein-coding genes, 22 tRNAs and 2 rRNAs. There were 4 types of stop codons which were TAA, TAG, AGG and T(AA) but start codon type was only one (ATG). The contents of GC were 44.09% and AT contents were 55.91%. To conduct phylogenetic analysis, 12 species in 3 families were used. The result suggested that T. loennbergii was close to Pagothenia borchgrevinki in Nototheniidae. This study would provide a fundamental data for molecular evolution of T. loennbergii. Taylor & Francis 2021-03-18 /pmc/articles/PMC7995823/ /pubmed/33796728 http://dx.doi.org/10.1080/23802359.2021.1899070 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Choi, Eunkyung
Im, Tae-Eul
Lee, Seung Jae
Jo, Euna
Kim, Jinmu
Kim, Sun Hee
Chi, Young Min
Kim, Jeong-Hoon
Park, Hyun
The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)
title The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)
title_full The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)
title_fullStr The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)
title_full_unstemmed The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)
title_short The complete mitochondrial genome of Trematomus loennbergii (Perciformes, Nototheniidae)
title_sort complete mitochondrial genome of trematomus loennbergii (perciformes, nototheniidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995823/
https://www.ncbi.nlm.nih.gov/pubmed/33796728
http://dx.doi.org/10.1080/23802359.2021.1899070
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